Detailed information of deep learning profile BP000643.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in WTC11 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000643.1
Cell line/tissue: WTC11
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR248QBT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.07 -0.00 0.00 -0.00 0.00 0.03 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.13 -0.00 0.06 0.00 0.00 0.00 0.00 0.03 0.01 0.00 ]
G [ 0.00 0.01 0.02 0.00 0.00 0.00 0.00 0.10 -0.00 0.13 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 0.00 -0.00 0.00 -0.00 0.09 0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1903 1762 1881 1714 1587 1639 1913 1674 1543 1694 1925 1640 1595 1795 2214 1893 1790 1686 1830 1578 1777 1990 946 5 8729 15 149 5 0 6459 281 1106 1971 2002 1926 1608 1488 1472 1793 2066 1677 1501 2086 2731 2398 1783 1845 2187 2098 2117 ]
C [ 2947 3086 2762 2977 3062 2825 2596 2601 2459 2659 2559 2719 2933 2901 2677 2294 2789 2871 2466 2377 1925 1613 3540 9144 89 5357 379 48 10 959 5665 4005 2992 2680 2643 2665 3104 2919 2428 2384 2955 3747 3202 2535 2296 2463 2711 2542 2507 2463 ]
G [ 2592 2459 2510 2479 2503 2713 2447 2394 2756 2936 3110 2933 2509 2396 2641 3357 3025 2501 3006 2865 4337 4877 1829 3 195 628 8622 18 9138 1419 965 1591 2207 2838 2923 2725 2435 2543 2968 3200 2982 2272 2262 2285 2471 2620 2934 2884 2827 2534 ]
T [ 1710 1845 1999 1982 2000 1975 2196 2483 2394 1863 1558 1860 2115 2060 1620 1608 1548 2094 1850 2332 1113 672 2837 0 139 3152 2 9081 4 315 2241 2450 1982 1632 1660 2154 2125 2218 1963 1502 1538 1632 1602 1601 1987 2286 1662 1539 1720 2038 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.01 -0.01 0.02 -0.02 -0.02 0.08 -0.09 0.01 -0.04 -0.07 0.04 -0.04 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.02 0.02 0.01 0.01 0.13 -0.04 0.10 -0.02 0.01 -0.05 0.00 0.05 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.04 0.01 -0.06 0.01 -0.02 0.10 -0.04 0.13 0.02 -0.00 0.02 0.02 0.02 0.01 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.03 0.04 -0.07 -0.03 0.01 -0.09 0.09 -0.02 -0.02 0.02 -0.00 -0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 615

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 598

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 301

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages