Detailed information of deep learning profile BP000642.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000642.1
Cell line/tissue: HepG2
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR099FCQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.10 0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.12 -0.00 0.09 -0.00 0.00 0.00 -0.00 0.01 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.04 -0.00 0.00 0.00 -0.00 0.07 -0.00 0.12 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.04 0.00 -0.00 0.00 -0.00 0.08 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4664 4305 4162 4502 5175 4643 4089 4133 4283 4186 3984 4397 5058 5086 4839 3984 4418 5378 5868 3592 1183 5 20540 15 6122 656 11 5407 2291 2752 5782 4152 4851 4102 3990 4278 4766 5029 4617 4257 4555 5400 5565 4825 4673 4692 4626 4578 4497 4424 ]
C [ 5299 5972 5812 5821 5540 5214 5208 4954 4968 5911 6356 6157 5614 5385 6003 6333 5806 4543 2445 1334 3169 20591 38 18691 913 450 18 4073 7017 8926 5818 6346 5383 6023 6373 5466 5103 5214 5811 6281 6068 5625 5260 5587 5689 5471 5339 5550 5346 5450 ]
G [ 5808 5552 5608 5918 5766 5448 5443 6716 7595 6347 5542 5589 5937 6415 5825 5807 5553 6384 9205 15199 1940 11 20 755 13551 427 20514 8831 4528 5060 4991 5734 6069 6237 5639 5820 6302 6396 6060 5549 5735 5430 5772 5707 5990 6200 6259 6052 6319 6180 ]
T [ 4839 4781 5028 4369 4129 5305 5870 4807 3764 4166 4728 4467 4001 3724 3943 4486 4833 4305 3092 485 14318 3 12 1149 24 19077 67 2299 6774 3872 4019 4378 4307 4248 4608 5046 4439 3971 4122 4523 4252 4155 4013 4491 4258 4247 4386 4430 4448 4556 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.00 -0.00 0.02 -0.02 -0.03 0.10 -0.10 0.02 -0.03 -0.06 0.03 -0.03 -0.01 -0.00 0.00 -0.00 ]
C [ 0.01 0.02 0.01 0.01 -0.01 0.01 0.12 -0.03 0.10 -0.02 -0.00 -0.05 0.00 0.04 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.05 -0.00 -0.04 -0.01 -0.01 0.10 -0.03 0.12 0.02 0.00 0.02 0.01 0.02 0.01 ]
T [ -0.00 0.00 0.00 -0.01 -0.04 0.05 -0.06 -0.04 0.02 -0.10 0.08 -0.02 -0.02 0.01 -0.01 -0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 751

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 743

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 287

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 103

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 41

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 37

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 26

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 23

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages