Detailed information of deep learning profile BP000642.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000642.1
Cell line/tissue: HepG2
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR099FCQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.08 -0.00 0.00 -0.00 0.00 0.04 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.12 -0.00 0.07 -0.00 0.00 0.00 -0.00 0.04 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.01 -0.00 0.00 0.00 -0.00 0.09 -0.00 0.12 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 0.00 0.10 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4556 4448 4430 4386 4247 4258 4491 4013 4155 4252 4523 4122 3971 4439 5046 4608 4248 4307 4378 4019 3872 6774 2299 67 19077 24 1149 12 3 14318 485 3092 4305 4833 4486 3943 3724 4001 4467 4728 4166 3764 4807 5870 5305 4129 4369 5028 4781 4839 ]
C [ 6180 6319 6052 6259 6200 5990 5707 5772 5430 5735 5549 6060 6396 6302 5820 5639 6237 6069 5734 4991 5060 4528 8831 20514 427 13551 755 20 11 1940 15199 9205 6384 5553 5807 5825 6415 5937 5589 5542 6347 7595 6716 5443 5448 5766 5918 5608 5552 5808 ]
G [ 5450 5346 5550 5339 5471 5689 5587 5260 5625 6068 6281 5811 5214 5103 5466 6373 6023 5383 6346 5818 8926 7017 4073 18 450 913 18691 38 20591 3169 1334 2445 4543 5806 6333 6003 5385 5614 6157 6356 5911 4968 4954 5208 5214 5540 5821 5812 5972 5299 ]
T [ 4424 4497 4578 4626 4692 4673 4825 5565 5400 4555 4257 4617 5029 4766 4278 3990 4102 4851 4152 5782 2752 2291 5407 11 656 6122 15 20540 5 1183 3592 5868 5378 4418 3984 4839 5086 5058 4397 3984 4186 4283 4133 4089 4643 5175 4502 4162 4305 4664 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.00 -0.01 0.01 -0.02 -0.02 0.08 -0.10 0.02 -0.04 -0.06 0.05 -0.04 -0.01 0.00 0.00 -0.00 ]
C [ 0.01 0.02 0.01 0.02 0.00 0.02 0.12 -0.03 0.10 -0.01 -0.01 -0.04 -0.00 0.05 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.04 0.00 -0.05 -0.00 -0.02 0.10 -0.03 0.12 0.01 -0.01 0.01 0.01 0.02 0.01 ]
T [ -0.00 0.00 -0.00 -0.01 -0.03 0.03 -0.06 -0.03 0.02 -0.10 0.10 -0.03 -0.02 0.02 -0.00 0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 751

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 743

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 287

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 103

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 41

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 37

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 26

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 23

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages