Detailed information of deep learning profile BP000641.1

This page shows detailed deep learning-derived predictions and motifs for USF1 in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000641.1
Cell line/tissue: HCT116
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BVK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 -0.00 0.00 -0.00 -0.00 0.08 -0.00 0.00 -0.00 -0.00 0.04 -0.00 -0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.12 -0.00 0.04 0.00 0.00 0.00 -0.00 0.04 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.02 -0.00 0.00 0.00 0.00 0.09 -0.00 0.12 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.01 0.00 0.09 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

A [ 1668 2136 1828 1670 1764 2200 1720 1564 1854 2684 2068 1986 1771 1881 1756 1892 2554 905 19 8395 32 205 13 3 6901 138 1160 2278 2612 1941 1575 1512 1555 1878 2230 1724 1470 2322 3396 2827 1795 2103 2602 2348 2403 2008 1984 1999 2403 2103 ]
C [ 2632 2199 2067 1976 2243 2016 2452 2755 2614 2078 1909 2230 2423 2120 1834 1420 1229 2876 8718 74 3520 256 14 9 538 6492 3703 2722 2109 2308 2343 2926 2522 1924 1942 2703 3708 3096 2011 1836 1981 2305 2057 2054 2097 1993 1977 2299 2029 2138 ]
G [ 2416 2116 1931 2436 2777 2933 2554 1905 1895 2316 3156 2873 2214 2710 2481 4309 4485 1299 13 132 858 8290 13 8742 1006 427 908 1655 2396 2672 2252 1920 1984 2796 3099 2574 1775 1721 1824 1947 2315 2571 2514 2642 2097 2597 2516 2372 2387 2585 ]
T [ 2042 2307 2932 2676 1974 1609 2032 2534 2395 1680 1625 1669 2350 2047 2687 1137 490 3678 8 157 4348 7 8718 4 313 1701 2987 2103 1641 1837 2588 2400 2697 2160 1487 1757 1805 1619 1527 2148 2667 1779 1585 1714 2161 2160 2281 2088 1939 1932 ]

Hypothetical CWM

A [ -0.00 -0.00 -0.00 -0.00 0.02 -0.02 -0.02 0.08 -0.08 0.02 -0.04 -0.05 0.05 -0.04 -0.01 0.00 0.00 0.01 ]
C [ 0.01 0.01 0.02 0.02 -0.00 0.02 0.12 -0.03 0.10 -0.00 -0.00 -0.05 -0.01 0.06 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.05 -0.00 -0.05 0.01 -0.01 0.09 -0.03 0.12 0.01 -0.01 0.02 0.02 0.02 0.01 ]
T [ 0.00 0.00 -0.00 -0.01 -0.03 0.04 -0.05 -0.03 0.02 -0.08 0.09 -0.03 -0.02 0.02 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 857

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 587

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 158

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 28

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages