Detailed information of deep learning profile BP000641.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000641.1
Cell line/tissue: HCT116
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BVK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.09 0.00 0.01 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.12 -0.00 0.09 0.00 0.00 0.00 -0.00 0.02 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.04 -0.00 0.00 0.00 0.00 0.04 -0.00 0.12 0.00 -0.00 0.00 0.00 ]
T [ 0.00 -0.00 -0.00 -0.00 -0.00 0.04 -0.00 -0.00 0.00 -0.00 0.08 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1932 1939 2088 2281 2160 2161 1714 1585 1779 2667 2148 1527 1619 1805 1757 1487 2160 2697 2400 2588 1837 1641 2103 2987 1701 313 4 8718 7 4348 157 8 3678 490 1137 2687 2047 2350 1669 1625 1680 2395 2534 2032 1609 1974 2676 2932 2307 2042 ]
C [ 2585 2387 2372 2516 2597 2097 2642 2514 2571 2315 1947 1824 1721 1775 2574 3099 2796 1984 1920 2252 2672 2396 1655 908 427 1006 8742 13 8290 858 132 13 1299 4485 4309 2481 2710 2214 2873 3156 2316 1895 1905 2554 2933 2777 2436 1931 2116 2416 ]
G [ 2138 2029 2299 1977 1993 2097 2054 2057 2305 1981 1836 2011 3096 3708 2703 1942 1924 2522 2926 2343 2308 2109 2722 3703 6492 538 9 14 256 3520 74 8718 2876 1229 1420 1834 2120 2423 2230 1909 2078 2614 2755 2452 2016 2243 1976 2067 2199 2632 ]
T [ 2103 2403 1999 1984 2008 2403 2348 2602 2103 1795 2827 3396 2322 1470 1724 2230 1878 1555 1512 1575 1941 2612 2278 1160 138 6901 3 13 205 32 8395 19 905 2554 1892 1756 1881 1771 1986 2068 2684 1854 1564 1720 2200 1764 1670 1828 2136 1668 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 0.02 -0.02 -0.03 0.09 -0.08 0.02 -0.03 -0.05 0.04 -0.03 -0.01 -0.00 0.00 0.00 ]
C [ 0.01 0.02 0.02 0.02 -0.01 0.01 0.12 -0.03 0.09 -0.01 0.01 -0.05 -0.00 0.05 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.06 -0.01 -0.05 -0.00 -0.00 0.10 -0.03 0.12 0.02 -0.00 0.02 0.02 0.01 0.01 ]
T [ 0.01 0.00 0.00 -0.01 -0.04 0.05 -0.05 -0.04 0.02 -0.08 0.08 -0.02 -0.02 0.02 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 857

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 587

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 158

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 28

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages