Detailed information of deep learning profile BP000640.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000640.1
Cell line/tissue: SK-N-SH
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BTZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.08 -0.00 0.00 -0.00 -0.00 0.04 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.12 -0.00 0.06 0.00 0.00 0.00 -0.00 0.04 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.01 -0.00 0.00 0.00 0.00 0.08 -0.00 0.13 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.09 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2013 2278 1994 1919 2037 2269 1991 1884 2093 2687 2206 2123 1942 2203 1979 1891 3039 959 25 9157 23 1185 15 2 7730 120 1206 2067 2757 2120 1926 1789 1734 2101 2266 1979 1773 2323 3063 2712 1987 2195 2466 2413 2420 2137 2070 2101 2315 2228 ]
C [ 2898 2616 2643 2512 2721 2593 2801 2976 2935 2651 2470 2845 2963 2687 2403 2148 2128 4243 9707 170 6166 608 13 7 616 7372 3957 3310 2537 2594 2703 3056 3030 2480 2492 2983 3751 3256 2571 2444 2556 2675 2606 2505 2478 2533 2548 2737 2601 2640 ]
G [ 2687 2453 2399 2855 2912 2960 2769 2428 2324 2557 3173 2831 2617 3013 2724 4268 3670 1696 11 210 604 7946 9 9740 1013 594 1174 2194 2739 3062 2677 2541 2518 2940 3196 2941 2237 2308 2249 2330 2558 2941 2810 2848 2543 2888 2747 2710 2684 2741 ]
T [ 2153 2404 2715 2465 2081 1929 2190 2463 2399 1856 1902 1952 2229 1848 2645 1444 914 2853 8 214 2958 12 9714 2 392 1665 3414 2180 1718 1975 2445 2365 2469 2230 1797 1848 1990 1864 1868 2265 2650 1940 1869 1985 2310 2193 2386 2203 2151 2142 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 0.02 -0.02 -0.03 0.08 -0.08 0.02 -0.04 -0.05 0.05 -0.03 -0.01 0.00 0.00 0.00 ]
C [ 0.01 0.02 0.02 0.02 0.00 0.02 0.12 -0.03 0.09 -0.01 0.00 -0.05 -0.01 0.05 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.04 -0.00 -0.05 0.01 -0.02 0.09 -0.03 0.13 0.02 -0.00 0.02 0.02 0.02 0.01 ]
T [ 0.00 0.00 0.00 -0.00 -0.02 0.04 -0.05 -0.03 0.03 -0.08 0.09 -0.03 -0.03 0.02 0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1439

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 593

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000641.1 USF1 ENCSR000BVK HCT116 Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages