Detailed information of deep learning profile BP000640.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000640.1
Cell line/tissue: SK-N-SH
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BTZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.09 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.13 -0.00 0.08 0.00 0.00 0.00 -0.00 0.01 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.04 -0.00 0.00 0.00 0.00 0.06 -0.00 0.12 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.04 -0.00 -0.00 0.00 -0.00 0.08 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2142 2151 2203 2386 2193 2310 1985 1869 1940 2650 2265 1868 1864 1990 1848 1797 2230 2469 2365 2445 1975 1718 2180 3414 1665 392 2 9714 12 2958 214 8 2853 914 1444 2645 1848 2229 1952 1902 1856 2399 2463 2190 1929 2081 2465 2715 2404 2153 ]
C [ 2741 2684 2710 2747 2888 2543 2848 2810 2941 2558 2330 2249 2308 2237 2941 3196 2940 2518 2541 2677 3062 2739 2194 1174 594 1013 9740 9 7946 604 210 11 1696 3670 4268 2724 3013 2617 2831 3173 2557 2324 2428 2769 2960 2912 2855 2399 2453 2687 ]
G [ 2640 2601 2737 2548 2533 2478 2505 2606 2675 2556 2444 2571 3256 3751 2983 2492 2480 3030 3056 2703 2594 2537 3310 3957 7372 616 7 13 608 6166 170 9707 4243 2128 2148 2403 2687 2963 2845 2470 2651 2935 2976 2801 2593 2721 2512 2643 2616 2898 ]
T [ 2228 2315 2101 2070 2137 2420 2413 2466 2195 1987 2712 3063 2323 1773 1979 2266 2101 1734 1789 1926 2120 2757 2067 1206 120 7730 2 15 1185 23 9157 25 959 3039 1891 1979 2203 1942 2123 2206 2687 2093 1884 1991 2269 2037 1919 1994 2278 2013 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.00 0.02 -0.03 -0.03 0.09 -0.08 0.03 -0.03 -0.05 0.04 -0.02 -0.00 0.00 0.00 0.00 ]
C [ 0.01 0.02 0.02 0.02 -0.00 0.02 0.13 -0.03 0.09 -0.02 0.01 -0.05 -0.00 0.04 0.02 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.05 -0.01 -0.05 0.00 -0.01 0.09 -0.03 0.12 0.02 0.00 0.02 0.02 0.02 0.01 ]
T [ 0.00 0.00 0.00 -0.01 -0.03 0.05 -0.05 -0.04 0.02 -0.08 0.08 -0.03 -0.02 0.02 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1439

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 593

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000641.1 USF1 ENCSR000BVK HCT116 Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages