Detailed information of deep learning profile BP000590.1

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This page shows detailed deep learning-derived predictions and motifs for REST in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000590.1
Cell line/tissue: Ishikawa
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BUU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.02 -0.00 -0.01 0.13 -0.00 -0.00 0.02 -0.01 -0.00 0.00 0.16 -0.00 0.19 -0.00 -0.01 0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.00 0.01 0.00 0.14 0.10 -0.00 0.00 0.00 0.00 -0.00 0.12 0.00 -0.00 0.06 -0.00 0.05 0.06 ]
G [ -0.00 0.01 0.05 0.00 0.00 0.00 0.00 -0.00 -0.00 0.22 0.25 -0.00 0.00 -0.00 0.22 -0.00 0.03 0.00 -0.00 ]
T [ 0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 0.07 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.02 -0.00 0.00 ]

Frequency matrix

       
A [ 401 408 425 414 358 412 384 417 393 396 457 394 384 352 328 394 681 274 217 1587 10 71 744 187 9 0 1558 11 1633 16 294 355 225 202 428 362 364 411 429 366 490 393 384 408 376 429 396 403 366 379 ]
C [ 408 427 432 403 429 424 417 409 414 432 391 427 498 465 541 441 210 323 563 22 1609 1479 229 100 0 0 46 1363 3 1 899 28 988 1079 556 410 396 430 407 526 365 460 456 433 466 417 386 407 446 429 ]
G [ 427 414 397 428 421 385 421 388 461 389 426 435 404 391 331 325 554 830 348 20 13 13 80 93 1630 1639 2 196 2 1622 145 618 331 47 157 421 492 415 443 383 409 387 397 407 378 397 411 426 436 432 ]
T [ 403 390 385 394 431 418 417 425 371 422 365 383 353 431 439 479 194 212 511 10 7 76 586 1259 0 0 33 69 1 0 301 638 95 311 498 446 387 383 360 364 375 399 402 391 419 396 446 403 391 399 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.01 0.01 0.05 -0.01 -0.02 0.13 -0.02 -0.01 0.06 -0.01 -0.01 0.01 0.17 -0.10 0.19 0.03 -0.02 0.03 0.02 0.00 0.01 0.00 0.01 0.00 ]
C [ 0.03 0.02 0.03 0.05 0.03 0.04 0.04 -0.01 0.14 0.11 0.02 0.08 -0.02 -0.12 0.02 0.15 0.04 -0.05 0.12 -0.11 0.09 0.09 0.05 0.02 0.02 0.02 ]
G [ 0.03 0.03 0.03 0.00 0.04 0.09 0.04 0.00 -0.01 0.04 0.02 -0.02 0.22 0.25 -0.08 0.04 -0.08 0.23 -0.01 0.11 0.02 -0.06 0.01 0.02 0.02 0.01 ]
T [ 0.00 0.01 0.04 0.02 -0.03 -0.03 0.06 -0.04 -0.00 0.00 0.04 0.09 -0.07 -0.04 -0.02 0.04 -0.08 -0.11 0.02 0.05 -0.04 0.02 0.01 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3479

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2634

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 609

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 231

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 122

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
BP000583.1 REST ENCSR000BOZ SK-N-SH Homo sapiens MA0138.3
BP000584.1 REST ENCSR000BPK Panc1 Homo sapiens MA0138.3
BP000585.1 REST ENCSR000BQP A549 Homo sapiens MA0138.3
BP000586.1 REST ENCSR000BQS GM12878 Homo sapiens MA0138.3
BP000587.1 REST ENCSR000BSP MCF-7 Homo sapiens MA0138.3
BP000588.1 REST ENCSR000BTF HL-60 Homo sapiens MA0138.3
BP000589.1 REST ENCSR000BUP Panc1 Homo sapiens MA0138.3
BP000591.1 REST ENCSR000BVI HCT116 Homo sapiens MA0138.3
BP000592.1 REST ENCSR054JMQ K562 Homo sapiens MA0138.3
Showing 10 profiles of page 2 from 3 pages