Detailed information of deep learning profile BP000583.1

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This page shows detailed deep learning-derived predictions and motifs for REST in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000583.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BOZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.03 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.00 ]
C [ -0.00 -0.00 0.00 0.03 -0.00 0.19 -0.00 0.00 -0.00 0.24 0.21 -0.00 -0.00 0.00 0.00 0.00 0.00 0.10 0.00 -0.00 0.00 0.01 ]
G [ 0.01 0.05 0.04 -0.00 0.06 -0.00 0.00 0.10 -0.00 0.00 0.00 0.01 -0.00 0.10 0.17 0.00 0.02 0.00 0.00 0.05 0.01 -0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.17 -0.00 0.11 -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.14 -0.01 -0.00 0.05 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 544 504 503 474 573 505 482 493 460 429 402 407 423 535 610 348 149 732 331 3 4 112 52 0 0 1418 656 89 3 4 474 116 121 394 851 647 454 536 490 531 469 520 469 460 511 447 440 446 488 541 ]
C [ 586 588 583 538 497 561 505 522 531 501 552 573 740 584 237 65 409 833 180 2074 1 287 9 2091 2079 130 124 15 3 11 463 1578 371 231 386 564 605 544 552 518 589 544 569 563 567 601 563 564 581 542 ]
G [ 564 531 500 562 567 569 652 660 529 717 559 632 495 471 757 1441 1285 42 1278 3 0 1687 109 0 0 233 292 1921 2097 9 937 226 146 1157 621 500 588 529 497 555 556 505 568 529 571 564 544 581 516 504 ]
T [ 410 481 518 530 467 469 465 429 584 457 591 492 446 514 500 250 261 497 315 24 2099 18 1934 13 25 323 1032 79 1 2080 230 184 1466 322 246 393 457 495 565 500 490 535 498 552 455 492 557 513 519 517 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.01 0.01 -0.04 0.03 -0.00 -0.08 -0.08 0.04 -0.01 -0.07 -0.10 0.06 0.03 0.01 -0.01 -0.05 0.04 -0.04 -0.05 -0.00 0.05 0.01 0.00 -0.01 -0.00 ]
C [ 0.03 0.02 0.02 -0.02 0.04 0.10 -0.01 0.19 -0.03 0.04 -0.05 0.24 0.21 0.00 0.03 0.03 -0.02 -0.00 0.04 0.12 0.05 -0.00 0.02 0.04 0.03 0.02 0.03 ]
G [ 0.02 0.03 0.05 0.08 0.07 -0.07 0.11 -0.03 0.01 0.13 0.02 -0.10 -0.01 0.08 0.02 0.11 0.17 -0.02 0.05 0.03 0.01 0.07 0.03 0.00 0.02 0.02 0.02 ]
T [ -0.01 -0.00 -0.00 -0.01 0.02 0.01 -0.01 0.01 0.17 -0.10 0.12 0.02 -0.00 -0.02 0.04 -0.04 -0.05 0.14 -0.04 -0.02 0.06 -0.00 -0.03 -0.00 -0.00 0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3143

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2405

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1509

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 147

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 100

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 49

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages