Detailed information of deep learning profile BP000574.1

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This page shows detailed deep learning-derived predictions and motifs for REST in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000574.1
Cell line/tissue: H1
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BHM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.15 -0.00 -0.01 0.28 -0.00 -0.00 0.02 -0.02 -0.00 -0.00 0.13 -0.00 0.19 -0.00 -0.01 0.00 0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 0.00 0.16 0.00 -0.00 0.04 0.00 0.31 0.16 -0.00 0.01 -0.00 0.00 -0.00 0.11 0.00 -0.00 0.07 -0.00 0.04 0.06 ]
G [ 0.01 0.01 0.00 0.00 -0.00 0.00 0.25 0.01 -0.00 0.00 -0.00 -0.00 -0.01 0.25 0.28 -0.00 0.00 -0.00 0.21 -0.00 0.04 0.00 -0.00 ]
T [ -0.00 0.00 0.03 0.09 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.04 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.01 0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 891 930 858 988 835 886 960 854 915 848 846 1017 968 830 579 196 256 3480 23 333 3651 2 99 1825 814 124 115 2999 134 3486 260 594 918 607 551 944 931 860 849 1041 786 1005 725 851 868 792 942 887 806 783 ]
C [ 873 850 1003 952 1044 987 859 976 817 889 947 833 782 914 567 737 3017 16 10 1831 4 3662 3268 541 595 9 8 381 2679 65 64 1703 227 1820 2147 1198 880 850 1072 914 1207 934 1111 1036 974 930 986 917 917 980 ]
G [ 972 960 972 949 1001 979 1027 983 967 1067 924 948 1004 979 848 474 117 148 3624 1017 8 4 33 301 384 3510 3540 116 614 58 3265 632 1631 835 287 542 1069 1248 1000 1014 893 945 929 935 1038 967 938 1052 1083 1000 ]
T [ 935 931 838 782 791 819 825 858 972 867 954 873 917 948 1677 2264 281 27 14 490 8 3 271 1004 1878 28 8 175 244 62 82 742 895 409 686 987 791 713 750 702 785 787 906 849 791 982 805 815 865 908 ]

Hypothetical CWM

   
A [ 0.00 0.02 0.00 0.00 -0.08 -0.02 0.15 -0.04 -0.05 0.28 -0.05 -0.03 0.08 -0.02 -0.02 0.00 0.16 -0.07 0.19 0.02 -0.02 0.03 0.03 -0.01 0.01 0.01 -0.00 -0.00 ]
C [ 0.03 0.02 0.02 -0.02 0.04 0.17 0.04 -0.00 0.10 -0.06 0.31 0.18 0.03 0.12 0.01 -0.12 0.04 0.15 0.01 -0.06 0.15 -0.08 0.08 0.09 0.05 0.04 0.03 0.03 ]
G [ 0.03 0.04 0.05 0.03 0.01 -0.05 0.03 0.26 0.07 -0.04 -0.04 0.00 0.05 -0.01 0.26 0.29 -0.06 0.06 -0.01 0.22 0.01 0.12 0.04 -0.03 0.02 0.02 0.02 0.02 ]
T [ -0.00 -0.00 0.02 0.06 0.12 0.00 -0.13 -0.08 0.06 -0.06 -0.05 0.04 0.04 0.11 -0.06 -0.04 0.01 0.04 -0.08 -0.07 0.02 0.04 -0.04 0.02 -0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6416

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1248

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 560

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 406

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 119

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 77

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 20

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages