Detailed information of deep learning profile BP000590.1

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This page shows detailed deep learning-derived predictions and motifs for REST in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000590.1
Cell line/tissue: Ishikawa
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BUU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.02 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.07 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.00 ]
C [ -0.00 0.00 0.03 -0.00 0.22 -0.00 0.00 -0.00 0.25 0.22 -0.00 -0.00 0.00 0.00 0.00 0.00 0.05 0.01 -0.00 ]
G [ 0.06 0.05 -0.00 0.06 -0.00 0.00 0.12 -0.00 0.00 0.00 0.00 -0.00 0.10 0.14 0.00 0.01 0.00 0.00 0.01 ]
T [ -0.00 -0.00 0.00 -0.01 -0.00 0.19 -0.00 0.16 0.00 -0.00 -0.01 0.02 -0.00 -0.00 0.13 -0.01 -0.00 0.02 -0.00 ]

Frequency matrix

       
A [ 399 391 403 446 396 419 391 402 399 375 364 360 383 387 446 498 311 95 638 301 0 1 69 33 0 0 1259 586 76 7 10 511 212 194 479 439 431 353 383 365 422 371 425 417 418 431 394 385 390 403 ]
C [ 432 436 426 411 397 378 407 397 387 409 383 443 415 492 421 157 47 331 618 145 1622 2 196 2 1639 1630 93 80 13 13 20 348 830 554 325 331 391 404 435 426 389 461 388 421 385 421 428 397 414 427 ]
G [ 429 446 407 386 417 466 433 456 460 365 526 407 430 396 410 556 1079 988 28 899 1 3 1363 46 0 0 100 229 1479 1609 22 563 323 210 441 541 465 498 427 391 432 414 409 417 424 429 403 432 427 408 ]
T [ 379 366 403 396 429 376 408 384 393 490 366 429 411 364 362 428 202 225 355 294 16 1633 11 1558 0 9 187 744 71 10 1587 217 274 681 394 328 352 384 394 457 396 393 417 384 412 358 414 425 408 401 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 0.01 0.02 -0.04 0.05 0.02 -0.11 -0.08 0.04 -0.02 -0.04 -0.07 0.09 0.04 0.00 -0.00 -0.04 0.06 -0.03 -0.03 0.02 0.04 0.01 0.00 ]
C [ 0.01 0.02 0.02 0.01 -0.06 0.02 0.11 -0.01 0.23 -0.08 0.04 -0.08 0.25 0.22 -0.02 0.02 0.04 -0.01 0.00 0.04 0.09 0.04 0.00 0.03 0.03 0.03 ]
G [ 0.02 0.02 0.02 0.05 0.09 0.09 -0.11 0.12 -0.05 0.04 0.15 0.02 -0.12 -0.02 0.08 0.02 0.11 0.14 -0.01 0.04 0.04 0.03 0.05 0.03 0.02 0.03 ]
T [ 0.00 0.01 0.00 0.01 0.00 0.02 0.03 -0.02 0.03 0.19 -0.10 0.17 0.01 -0.01 -0.01 0.06 -0.01 -0.02 0.13 -0.02 -0.01 0.05 0.01 -0.01 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3479

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2634

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 609

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 231

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 122

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages