Detailed information of deep learning profile BP000592.1

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This page shows detailed deep learning-derived predictions and motifs for REST in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000592.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR054JMQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.06 -0.00 -0.00 0.13 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.06 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.00 0.06 0.00 0.00 0.03 0.00 0.14 0.07 -0.00 0.01 0.00 0.00 -0.00 0.06 0.00 -0.00 0.04 -0.00 0.02 0.03 0.01 ]
G [ 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.11 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.12 0.13 -0.00 0.00 0.00 0.11 -0.00 0.02 0.00 -0.00 -0.00 ]
T [ -0.00 -0.00 0.00 0.02 0.05 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.02 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 357 365 372 357 323 352 368 359 356 337 356 335 359 291 191 53 91 1334 54 123 1445 15 51 798 257 59 26 1257 25 1422 61 215 351 214 166 398 374 311 300 346 273 361 233 261 314 286 337 342 298 260 ]
C [ 400 395 417 415 417 412 398 388 388 383 403 365 347 370 190 228 1257 40 43 878 19 1462 1339 191 348 15 9 122 1162 33 21 896 59 847 1037 583 415 400 459 432 537 437 519 520 457 455 469 414 395 475 ]
G [ 416 440 432 438 482 466 457 452 407 453 420 463 476 444 354 154 58 97 1363 339 22 10 31 164 127 1410 1443 33 229 22 1396 184 658 307 63 190 408 547 479 468 380 397 404 372 381 412 389 416 458 437 ]
T [ 328 301 280 291 279 271 278 302 350 328 322 338 319 396 766 1066 95 30 41 161 15 14 80 348 769 17 23 89 85 24 23 206 433 133 235 330 304 243 263 255 311 306 345 348 349 348 306 329 350 329 ]

Hypothetical CWM

   
A [ -0.00 0.01 -0.00 0.00 -0.03 -0.01 0.06 -0.01 -0.03 0.13 -0.03 -0.02 0.03 -0.01 -0.01 0.00 0.07 -0.06 0.08 -0.00 -0.01 0.00 0.01 -0.00 0.00 -0.00 -0.00 ]
C [ 0.02 0.01 0.01 -0.02 0.01 0.07 0.00 -0.01 0.04 -0.03 0.14 0.07 0.01 0.04 -0.00 -0.07 0.01 0.08 -0.01 -0.04 0.06 -0.05 0.04 0.04 0.03 0.01 0.01 ]
G [ 0.02 0.02 0.02 0.01 0.00 -0.02 0.03 0.11 0.03 -0.02 -0.02 -0.00 0.01 -0.00 0.12 0.13 -0.03 0.03 0.01 0.11 -0.00 0.06 0.02 -0.01 0.01 0.01 0.01 ]
T [ -0.01 -0.01 0.01 0.03 0.06 0.00 -0.05 -0.04 0.02 -0.03 -0.03 0.03 0.02 0.04 -0.05 -0.01 0.00 0.01 -0.04 -0.03 0.00 0.02 -0.03 0.00 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 878

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 281

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 207

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 124

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages