Detailed information of deep learning profile BP000591.1

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This page shows detailed deep learning-derived predictions and motifs for REST in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000591.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BVI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.01 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.03 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.08 0.03 0.00 -0.01 -0.00 ]
C [ 0.00 -0.00 0.01 0.04 -0.00 0.22 0.00 0.00 0.00 0.23 0.23 -0.00 -0.00 0.00 0.00 0.00 0.01 0.19 0.00 -0.00 -0.00 0.00 0.00 0.01 0.01 ]
G [ 0.01 0.06 0.04 -0.00 0.06 0.00 0.00 0.12 -0.00 0.00 0.00 0.01 -0.00 0.15 0.19 0.00 0.04 0.00 0.00 0.11 0.00 -0.00 0.00 0.00 0.01 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.16 -0.00 0.12 -0.00 -0.00 -0.01 0.02 -0.00 -0.00 0.17 -0.01 -0.00 0.10 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 544 492 489 471 569 477 526 544 441 454 385 415 384 448 543 383 190 605 391 46 47 160 100 20 23 1150 510 130 11 21 310 31 45 202 1459 1101 590 522 491 528 492 566 489 440 462 439 418 462 499 512 ]
C [ 573 620 576 531 526 558 528 512 527 488 615 620 751 585 284 87 428 962 259 1932 46 300 61 2007 1984 183 168 10 10 15 417 1945 153 96 182 423 560 607 557 525 643 540 599 596 590 603 596 570 553 569 ]
G [ 575 562 551 564 570 625 625 682 583 733 537 658 484 517 729 1350 1169 66 1099 44 35 1621 137 23 37 413 247 1932 2075 7 1217 75 37 1691 358 290 529 435 506 533 507 494 544 503 545 571 550 556 543 520 ]
T [ 421 439 497 547 448 453 434 375 562 438 576 420 494 563 557 293 326 480 364 91 1985 32 1815 63 69 367 1188 41 17 2070 169 62 1878 124 114 299 434 549 559 527 471 513 481 574 516 500 549 525 518 512 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.01 -0.00 0.03 -0.06 0.04 0.00 -0.07 -0.07 0.03 -0.01 -0.02 -0.07 0.08 0.01 0.04 -0.03 -0.01 0.04 -0.08 -0.07 0.00 0.10 0.05 0.02 -0.01 -0.01 -0.00 ]
C [ 0.01 0.02 0.01 0.02 -0.06 0.06 0.11 0.00 0.22 -0.04 0.05 -0.05 0.24 0.23 -0.03 0.05 -0.01 -0.01 -0.03 0.07 0.20 0.01 -0.02 -0.01 0.02 0.03 0.03 0.04 0.03 ]
G [ 0.02 0.02 0.03 0.05 0.09 0.07 -0.11 0.12 -0.05 -0.00 0.15 0.01 -0.09 0.01 0.10 0.01 0.16 0.20 -0.07 0.09 0.02 0.01 0.13 0.04 -0.03 0.02 0.01 0.03 0.01 ]
T [ -0.00 -0.00 0.01 0.01 -0.00 0.01 0.02 -0.02 -0.03 0.17 -0.12 0.13 -0.03 -0.04 -0.03 0.05 -0.07 -0.03 0.17 -0.07 -0.04 0.11 -0.03 -0.06 0.01 0.00 0.02 -0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 694

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 113

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 100

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages