Detailed information of deep learning profile BP000589.1

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This page shows detailed deep learning-derived predictions and motifs for REST in Panc1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000589.1
Cell line/tissue: Panc1
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BUP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.03 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.07 0.02 0.00 -0.00 ]
C [ -0.00 0.00 0.04 -0.00 0.20 0.00 0.00 -0.00 0.24 0.21 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.19 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.05 0.03 -0.00 0.05 -0.00 0.00 0.10 -0.00 0.00 0.00 0.01 -0.00 0.13 0.23 -0.00 0.03 0.00 -0.00 0.13 0.00 -0.00 -0.00 -0.00 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.00 0.16 -0.00 0.10 -0.00 -0.00 -0.01 0.02 -0.00 -0.00 0.21 -0.00 -0.00 0.11 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 518 498 442 448 568 499 484 530 437 424 374 383 370 448 552 356 195 569 428 13 8 134 75 3 5 1090 527 93 3 2 263 8 8 129 1434 1037 554 540 536 528 484 572 498 434 453 415 417 442 499 530 ]
C [ 578 603 579 519 518 549 512 523 513 490 560 585 752 587 244 94 399 970 258 1963 6 321 32 2032 2018 152 164 10 3 4 477 2046 48 39 194 440 565 588 534 520 621 512 550 602 561 600 562 555 539 572 ]
G [ 559 535 540 586 541 580 641 668 555 725 568 656 475 491 732 1375 1162 65 1055 7 12 1601 168 4 4 400 244 1930 2070 3 1183 8 8 1806 364 290 528 450 461 538 496 489 550 508 560 581 544 573 500 480 ]
T [ 422 441 516 524 450 449 440 356 572 438 575 453 480 551 549 252 321 473 336 94 2051 21 1802 38 50 435 1142 44 1 2068 154 15 2013 103 85 310 430 499 546 491 476 504 479 533 503 481 554 507 539 495 ]

Hypothetical CWM

   
A [ 0.01 0.00 0.01 0.01 0.02 -0.03 0.04 0.02 -0.08 -0.08 0.04 -0.00 -0.02 -0.07 0.09 0.04 0.05 -0.02 -0.03 0.05 -0.06 -0.09 0.01 0.09 0.05 0.03 0.00 0.00 ]
C [ 0.01 0.02 0.01 0.02 -0.03 0.05 0.12 0.01 0.21 -0.02 0.05 -0.01 0.24 0.21 -0.00 0.04 -0.02 -0.02 -0.03 0.07 0.19 0.06 -0.02 -0.00 0.02 0.04 0.03 0.04 ]
G [ 0.02 0.03 0.02 0.05 0.08 0.07 -0.08 0.12 -0.05 0.04 0.13 0.03 -0.12 -0.00 0.08 0.03 0.14 0.23 -0.07 0.07 0.01 0.04 0.14 0.05 -0.01 0.03 0.02 0.03 ]
T [ 0.01 0.01 0.01 0.01 0.00 0.02 0.01 -0.01 0.02 0.16 -0.09 0.12 -0.00 0.01 -0.01 0.06 -0.03 -0.04 0.21 -0.02 -0.03 0.11 -0.02 -0.03 0.01 0.02 0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1956

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 353

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 137

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 27

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
BP000583.1 REST ENCSR000BOZ SK-N-SH Homo sapiens MA0138.3
BP000584.1 REST ENCSR000BPK Panc1 Homo sapiens MA0138.3
BP000585.1 REST ENCSR000BQP A549 Homo sapiens MA0138.3
BP000586.1 REST ENCSR000BQS GM12878 Homo sapiens MA0138.3
BP000587.1 REST ENCSR000BSP MCF-7 Homo sapiens MA0138.3
BP000588.1 REST ENCSR000BTF HL-60 Homo sapiens MA0138.3
BP000590.1 REST ENCSR000BUU Ishikawa Homo sapiens MA0138.3
BP000591.1 REST ENCSR000BVI HCT116 Homo sapiens MA0138.3
BP000592.1 REST ENCSR054JMQ K562 Homo sapiens MA0138.3
Showing 10 profiles of page 2 from 3 pages