Detailed information of deep learning profile BP000589.1

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This page shows detailed deep learning-derived predictions and motifs for REST in Panc1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000589.1
Cell line/tissue: Panc1
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BUP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.11 -0.00 -0.00 0.21 -0.00 -0.00 0.02 -0.01 -0.00 -0.00 0.10 -0.00 0.16 -0.00 -0.01 -0.00 -0.00 -0.00 ]
C [ -0.00 -0.00 -0.00 0.00 0.13 -0.00 0.00 0.03 -0.00 0.23 0.13 -0.00 0.01 0.00 0.00 -0.00 0.10 0.00 -0.00 0.05 -0.00 0.03 0.05 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.19 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.21 0.24 -0.00 0.00 0.00 0.20 -0.00 0.04 0.00 -0.00 ]
T [ -0.00 0.00 0.02 0.07 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 495 539 507 554 481 503 533 479 504 476 491 546 499 430 310 85 103 2013 15 154 2068 1 44 1142 435 50 38 1802 21 2051 94 336 473 321 252 549 551 480 453 575 438 572 356 440 449 450 524 516 441 422 ]
C [ 480 500 573 544 581 560 508 550 489 496 538 461 450 528 290 364 1806 8 8 1183 3 2070 1930 244 400 4 4 168 1601 12 7 1055 65 1162 1375 732 491 475 656 568 725 555 668 641 580 541 586 540 535 559 ]
G [ 572 539 555 562 600 561 602 550 512 621 520 534 588 565 440 194 39 48 2046 477 4 3 10 164 152 2018 2032 32 321 6 1963 258 970 399 94 244 587 752 585 560 490 513 523 512 549 518 519 579 603 578 ]
T [ 530 499 442 417 415 453 434 498 572 484 528 536 540 554 1037 1434 129 8 8 263 2 3 93 527 1090 5 3 75 134 8 13 428 569 195 356 552 448 370 383 374 424 437 530 484 499 568 448 442 498 518 ]

Hypothetical CWM

   
A [ 0.01 0.02 0.02 0.01 -0.03 -0.02 0.11 -0.03 -0.02 0.21 -0.04 -0.03 0.06 -0.01 0.01 -0.00 0.12 -0.09 0.16 0.02 -0.01 0.01 0.02 0.00 0.01 0.01 0.01 0.01 ]
C [ 0.03 0.02 0.03 -0.01 0.05 0.14 0.04 0.01 0.07 -0.07 0.23 0.14 0.03 0.08 -0.00 -0.12 0.03 0.13 0.04 -0.05 0.12 -0.08 0.07 0.08 0.05 0.02 0.03 0.02 ]
G [ 0.04 0.03 0.04 0.02 -0.00 -0.02 0.06 0.19 0.07 -0.03 -0.02 -0.02 0.04 -0.00 0.21 0.24 -0.01 0.05 -0.02 0.21 0.01 0.12 0.05 -0.03 0.02 0.01 0.02 0.01 ]
T [ 0.00 0.00 0.03 0.05 0.09 0.01 -0.09 -0.06 0.05 -0.03 -0.02 0.05 0.04 0.09 -0.07 -0.02 -0.00 0.04 -0.08 -0.08 0.02 0.04 -0.03 0.02 0.01 0.01 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1956

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 353

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 137

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 27

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages