Detailed information of deep learning profile BP000585.1

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This page shows detailed deep learning-derived predictions and motifs for REST in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000585.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BQP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.04 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.06 0.02 0.00 -0.00 ]
C [ -0.00 0.00 0.03 -0.00 0.17 -0.00 0.00 -0.00 0.22 0.17 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.13 0.00 -0.00 -0.00 0.00 0.00 0.01 ]
G [ 0.04 0.03 -0.00 0.05 -0.00 0.00 0.09 -0.00 -0.00 0.00 0.01 -0.00 0.11 0.19 -0.00 0.03 0.00 -0.00 0.08 0.00 -0.00 -0.00 0.00 ]
T [ 0.00 0.00 0.00 -0.00 0.00 0.15 -0.00 0.11 -0.00 -0.00 -0.01 0.02 -0.00 -0.00 0.18 -0.00 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 583 597 562 536 634 543 568 612 509 510 427 454 458 547 625 426 202 745 437 9 2 129 73 0 1 1410 672 104 4 2 388 78 69 241 1509 1146 633 582 593 589 551 638 542 506 518 479 491 513 573 598 ]
C [ 701 679 673 621 600 637 607 597 609 587 683 702 871 686 280 83 457 1050 270 2308 3 342 33 2387 2365 182 181 17 2 6 517 2108 236 156 252 536 647 695 645 630 727 617 666 678 690 698 661 661 649 649 ]
G [ 667 643 614 666 662 715 749 793 654 843 662 738 545 596 878 1631 1405 75 1356 16 6 1925 151 1 1 408 280 2249 2411 4 1330 126 81 1823 495 379 661 552 563 618 600 589 637 596 647 652 644 667 596 608 ]
T [ 470 502 572 598 525 526 497 419 649 481 649 527 547 592 638 281 357 551 358 88 2410 25 2164 33 54 421 1288 51 4 2409 186 109 2035 201 165 360 480 592 620 584 543 577 576 641 566 592 625 580 603 566 ]

Hypothetical CWM

   
A [ -0.01 -0.00 -0.00 -0.00 0.01 -0.03 0.02 0.01 -0.08 -0.07 0.01 -0.01 -0.04 -0.08 0.07 0.03 0.03 -0.03 -0.05 0.04 -0.03 -0.08 -0.02 0.08 0.05 0.02 -0.01 0.00 ]
C [ 0.01 0.02 0.02 0.01 -0.03 0.03 0.07 -0.00 0.17 -0.05 0.04 -0.06 0.22 0.18 -0.01 0.01 -0.00 -0.04 -0.01 0.04 0.14 0.04 -0.02 -0.01 0.02 0.02 0.02 0.02 ]
G [ 0.02 0.02 0.02 0.04 0.06 0.05 -0.06 0.09 -0.02 0.01 0.12 0.02 -0.11 -0.01 0.06 0.02 0.12 0.19 -0.09 0.06 0.01 0.00 0.09 0.02 -0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 0.00 0.01 0.01 0.02 -0.02 0.01 0.15 -0.08 0.13 -0.01 -0.00 -0.02 0.06 -0.05 -0.05 0.18 -0.05 -0.04 0.09 0.00 -0.04 -0.00 -0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2583

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1200

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 901

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 272

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 227

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 213

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 137

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 121

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 96

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 86

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
BP000583.1 REST ENCSR000BOZ SK-N-SH Homo sapiens MA0138.3
BP000584.1 REST ENCSR000BPK Panc1 Homo sapiens MA0138.3
BP000586.1 REST ENCSR000BQS GM12878 Homo sapiens MA0138.3
BP000587.1 REST ENCSR000BSP MCF-7 Homo sapiens MA0138.3
BP000588.1 REST ENCSR000BTF HL-60 Homo sapiens MA0138.3
BP000589.1 REST ENCSR000BUP Panc1 Homo sapiens MA0138.3
BP000590.1 REST ENCSR000BUU Ishikawa Homo sapiens MA0138.3
BP000591.1 REST ENCSR000BVI HCT116 Homo sapiens MA0138.3
BP000592.1 REST ENCSR054JMQ K562 Homo sapiens MA0138.3
Showing 10 profiles of page 2 from 3 pages