Detailed information of deep learning profile BP000585.1

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This page shows detailed deep learning-derived predictions and motifs for REST in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000585.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BQP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 -0.00 0.18 -0.00 -0.00 0.02 -0.01 -0.00 -0.00 0.11 -0.00 0.15 0.00 -0.00 0.00 0.00 0.00 ]
C [ 0.00 -0.00 -0.00 0.00 0.08 -0.00 0.00 0.03 -0.00 0.19 0.11 -0.00 0.01 0.00 -0.00 -0.00 0.09 0.00 -0.00 0.05 -0.00 0.03 0.04 ]
G [ 0.01 0.00 0.00 -0.00 -0.00 0.00 0.13 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.17 0.22 -0.00 0.00 -0.00 0.17 -0.00 0.03 0.00 -0.00 ]
T [ -0.00 0.00 0.02 0.06 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.04 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 566 603 580 625 592 566 641 576 577 543 584 620 592 480 360 165 201 2035 109 186 2409 4 51 1288 421 54 33 2164 25 2410 88 358 551 357 281 638 592 547 527 649 481 649 419 497 526 525 598 572 502 470 ]
C [ 608 596 667 644 652 647 596 637 589 600 618 563 552 661 379 495 1823 81 126 1330 4 2411 2249 280 408 1 1 151 1925 6 16 1356 75 1405 1631 878 596 545 738 662 843 654 793 749 715 662 666 614 643 667 ]
G [ 649 649 661 661 698 690 678 666 617 727 630 645 695 647 536 252 156 236 2108 517 6 2 17 181 182 2365 2387 33 342 3 2308 270 1050 457 83 280 686 871 702 683 587 609 597 607 637 600 621 673 679 701 ]
T [ 598 573 513 491 479 518 506 542 638 551 589 593 582 633 1146 1509 241 69 78 388 2 4 104 672 1410 1 0 73 129 2 9 437 745 202 426 625 547 458 454 427 510 509 612 568 543 634 536 562 597 583 ]

Hypothetical CWM

   
A [ 0.00 0.01 -0.00 -0.00 -0.04 0.00 0.09 -0.04 -0.05 0.18 -0.05 -0.05 0.06 -0.02 -0.00 -0.01 0.13 -0.08 0.15 0.01 -0.02 0.02 0.01 0.01 0.00 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 -0.02 0.02 0.09 0.00 0.01 0.06 -0.09 0.19 0.12 0.02 0.06 -0.01 -0.11 0.02 0.12 0.01 -0.02 0.09 -0.06 0.05 0.06 0.04 0.02 0.02 0.02 ]
G [ 0.02 0.02 0.02 0.02 -0.01 -0.02 0.04 0.14 0.04 -0.01 -0.04 -0.00 0.01 -0.01 0.18 0.22 -0.06 0.04 -0.05 0.17 -0.00 0.07 0.03 -0.03 0.01 0.02 0.02 0.01 ]
T [ 0.00 -0.01 0.02 0.05 0.08 -0.02 -0.08 -0.03 0.04 -0.05 -0.03 0.03 0.03 0.07 -0.08 -0.04 -0.01 0.01 -0.07 -0.08 0.01 0.02 -0.03 0.01 -0.00 -0.00 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2583

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1200

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 901

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 272

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 227

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 213

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 137

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 121

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 96

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 86

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages