Detailed information of deep learning profile BP000584.1

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This page shows detailed deep learning-derived predictions and motifs for REST in Panc1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000584.1
Cell line/tissue: Panc1
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BPK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 -0.01 0.18 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 0.09 -0.00 0.13 -0.00 -0.01 -0.01 -0.00 -0.00 -0.01 -0.00 ]
C [ 0.01 0.01 0.00 -0.00 0.00 0.11 0.00 0.00 0.05 0.00 0.20 0.13 -0.00 0.01 0.00 0.00 0.00 0.11 0.00 0.00 0.06 -0.00 0.04 0.05 0.02 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.00 -0.00 0.00 0.17 0.01 0.00 0.00 0.00 0.00 -0.00 0.18 0.21 0.00 0.00 0.00 0.18 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.01 -0.01 -0.00 0.03 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 456 479 474 486 460 460 500 447 469 430 436 475 462 384 277 92 103 1834 43 151 2002 10 48 1116 356 87 68 1642 35 1869 88 327 431 288 265 514 542 436 392 485 364 479 333 359 405 418 455 449 392 376 ]
C [ 543 539 584 572 561 575 538 575 514 522 561 522 486 552 268 356 1742 48 60 1276 8 2013 1842 255 464 61 47 213 1570 51 67 1106 103 1116 1321 786 534 500 654 607 771 624 704 646 629 599 616 567 570 605 ]
G [ 594 603 590 602 642 628 618 577 562 632 563 573 630 579 455 179 70 125 1909 400 18 7 22 228 218 1873 1886 85 315 78 1853 295 966 463 111 280 576 784 644 596 493 542 536 572 578 547 543 588 618 602 ]
T [ 449 421 394 382 379 379 386 443 497 458 482 472 464 527 1042 1415 127 35 30 215 14 12 130 443 1004 21 41 102 122 44 34 314 542 175 345 462 390 322 352 354 414 397 469 465 430 478 428 438 462 459 ]

Hypothetical CWM

   
A [ -0.02 -0.00 -0.00 -0.01 -0.07 -0.03 0.09 -0.04 -0.06 0.18 -0.03 -0.07 0.03 -0.03 -0.04 -0.03 0.10 -0.10 0.13 0.00 -0.04 -0.02 0.00 -0.01 -0.01 -0.01 -0.01 ]
C [ 0.04 0.03 0.03 -0.01 0.03 0.12 0.04 0.03 0.09 -0.06 0.20 0.14 0.02 0.09 0.06 -0.08 0.03 0.14 0.03 -0.04 0.12 -0.07 0.07 0.08 0.06 0.03 0.03 ]
G [ 0.04 0.04 0.04 0.04 0.03 -0.02 0.06 0.18 0.07 0.00 -0.03 -0.00 0.07 -0.01 0.19 0.21 -0.02 0.05 0.02 0.19 0.01 0.13 0.06 -0.02 0.02 0.03 0.03 ]
T [ -0.01 -0.03 0.01 0.05 0.09 0.00 -0.11 -0.09 0.02 -0.06 -0.04 0.03 0.00 0.06 -0.10 -0.02 -0.02 -0.01 -0.10 -0.08 0.00 0.01 -0.06 -0.00 -0.01 -0.01 -0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1005

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 175

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 46

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
BP000583.1 REST ENCSR000BOZ SK-N-SH Homo sapiens MA0138.3
BP000585.1 REST ENCSR000BQP A549 Homo sapiens MA0138.3
BP000586.1 REST ENCSR000BQS GM12878 Homo sapiens MA0138.3
BP000587.1 REST ENCSR000BSP MCF-7 Homo sapiens MA0138.3
BP000588.1 REST ENCSR000BTF HL-60 Homo sapiens MA0138.3
BP000589.1 REST ENCSR000BUP Panc1 Homo sapiens MA0138.3
BP000590.1 REST ENCSR000BUU Ishikawa Homo sapiens MA0138.3
BP000591.1 REST ENCSR000BVI HCT116 Homo sapiens MA0138.3
BP000592.1 REST ENCSR054JMQ K562 Homo sapiens MA0138.3
Showing 10 profiles of page 2 from 3 pages