Detailed information of deep learning profile BP000584.1

  1. Home
  2. Deep Learning Profile > BP000584.1
This page shows detailed deep learning-derived predictions and motifs for REST in Panc1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000584.1
Cell line/tissue: Panc1
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BPK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 0.03 -0.00 -0.01 -0.01 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.18 0.00 0.00 0.00 0.21 0.18 -0.00 0.00 0.00 0.00 0.00 0.01 0.17 0.00 -0.00 0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.02 0.05 0.04 -0.00 0.06 0.00 0.00 0.11 0.00 0.00 0.00 0.01 -0.00 0.13 0.20 0.00 0.05 0.00 0.00 0.11 0.00 -0.00 0.00 0.01 0.01 ]
T [ -0.00 -0.01 -0.00 -0.00 -0.01 -0.01 -0.00 0.13 -0.00 0.09 -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.18 -0.01 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 -0.01 ]

Frequency matrix

       
A [ 459 462 438 428 478 430 465 469 397 414 354 352 322 390 462 345 175 542 314 34 44 122 102 41 21 1004 443 130 12 14 215 30 35 127 1415 1042 527 464 472 482 458 497 443 386 379 379 382 394 421 449 ]
C [ 602 618 588 543 547 578 572 536 542 493 596 644 784 576 280 111 463 966 295 1853 78 315 85 1886 1873 218 228 22 7 18 400 1909 125 70 179 455 579 630 573 563 632 562 577 618 628 642 602 590 603 594 ]
G [ 605 570 567 616 599 629 646 704 624 771 607 654 500 534 786 1321 1116 103 1106 67 51 1570 213 47 61 464 255 1842 2013 8 1276 60 48 1742 356 268 552 486 522 561 522 514 575 538 575 561 572 584 539 543 ]
T [ 376 392 449 455 418 405 359 333 479 364 485 392 436 542 514 265 288 431 327 88 1869 35 1642 68 87 356 1116 48 10 2002 151 43 1834 103 92 277 384 462 475 436 430 469 447 500 460 460 486 474 479 456 ]

Hypothetical CWM

   
A [ -0.02 -0.01 -0.01 -0.00 -0.06 0.01 0.00 -0.08 -0.10 -0.01 -0.02 -0.02 -0.10 0.06 0.00 0.03 -0.04 -0.06 0.02 -0.09 -0.11 0.00 0.09 0.05 0.01 -0.03 -0.01 ]
C [ 0.03 0.03 0.02 -0.02 0.06 0.13 0.01 0.19 0.02 0.05 -0.02 0.21 0.19 -0.01 0.07 -0.00 -0.03 0.00 0.07 0.18 0.06 -0.02 0.03 0.04 0.04 0.04 0.04 ]
G [ 0.03 0.03 0.06 0.08 0.07 -0.07 0.12 -0.04 0.03 0.14 0.03 -0.08 0.06 0.09 0.02 0.14 0.20 -0.06 0.09 0.03 0.04 0.12 0.03 -0.01 0.03 0.03 0.04 ]
T [ -0.01 -0.01 -0.01 -0.01 0.00 -0.02 -0.04 0.00 0.13 -0.10 0.10 -0.03 -0.04 -0.03 0.03 -0.07 -0.03 0.18 -0.06 -0.04 0.09 -0.03 -0.07 -0.01 -0.00 -0.00 -0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1005

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 175

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 46

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages