Detailed information of deep learning profile BP000573.1

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This page shows detailed deep learning-derived predictions and motifs for REST in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000573.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BGF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.11 -0.00 -0.01 0.21 -0.00 -0.00 0.02 -0.01 -0.00 -0.00 0.13 -0.00 0.18 -0.00 -0.01 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.11 0.00 0.00 0.04 0.00 0.23 0.13 -0.00 0.01 -0.00 -0.00 -0.00 0.12 0.00 -0.00 0.07 -0.00 0.04 0.06 0.01 ]
G [ 0.01 0.01 0.00 0.00 -0.00 0.00 0.19 0.01 0.00 0.00 0.00 0.00 -0.01 0.22 0.23 -0.00 0.00 -0.00 0.21 -0.00 0.05 0.01 -0.00 -0.00 ]
T [ -0.01 -0.00 0.02 0.06 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.01 0.04 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 632 686 641 722 629 643 697 620 654 607 625 680 651 563 430 198 232 2244 117 234 2710 5 71 1425 487 71 34 2417 21 2725 73 408 657 386 312 738 666 597 584 733 546 720 476 562 601 570 655 618 587 533 ]
C [ 684 684 790 733 763 753 696 720 681 734 747 675 638 763 468 605 2004 103 153 1424 8 2729 2518 352 456 6 2 199 2202 8 11 1597 76 1573 1867 994 693 647 839 753 956 717 899 840 789 773 777 711 751 783 ]
G [ 756 760 764 738 800 776 776 786 722 801 710 737 798 761 668 374 209 312 2398 661 13 6 27 223 221 2660 2702 33 408 6 2647 293 1185 553 104 328 779 971 812 776 667 735 704 719 745 699 702 793 779 770 ]
T [ 673 615 550 552 553 573 576 619 688 603 663 653 658 658 1179 1568 300 86 77 426 14 5 129 745 1581 8 7 96 114 6 14 447 827 233 462 685 607 530 510 483 576 573 666 624 610 703 611 623 628 659 ]

Hypothetical CWM

   
A [ -0.01 0.02 0.01 0.01 -0.07 -0.02 0.12 -0.02 -0.07 0.21 -0.06 -0.04 0.06 -0.03 -0.02 -0.01 0.14 -0.11 0.18 0.00 -0.04 0.01 0.03 0.00 0.01 -0.00 -0.00 -0.01 ]
C [ 0.03 0.02 0.02 -0.02 0.04 0.13 0.02 0.00 0.09 -0.09 0.23 0.14 0.01 0.09 0.01 -0.12 0.03 0.15 0.03 -0.08 0.13 -0.11 0.07 0.08 0.05 0.03 0.02 0.03 ]
G [ 0.03 0.02 0.03 0.02 0.01 -0.03 0.03 0.20 0.06 -0.01 -0.03 -0.04 0.05 -0.03 0.22 0.23 -0.07 0.04 -0.05 0.22 -0.01 0.12 0.05 -0.06 0.01 0.01 0.02 0.02 ]
T [ -0.01 -0.01 0.01 0.04 0.09 -0.01 -0.11 -0.09 0.04 -0.05 -0.02 0.04 0.02 0.09 -0.09 -0.02 -0.01 0.02 -0.10 -0.07 0.01 0.05 -0.06 0.02 0.00 0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 746

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 193

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 101

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 24

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 20

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000583.1 REST ENCSR000BOZ SK-N-SH Homo sapiens MA0138.3
BP000584.1 REST ENCSR000BPK Panc1 Homo sapiens MA0138.3
BP000585.1 REST ENCSR000BQP A549 Homo sapiens MA0138.3
BP000586.1 REST ENCSR000BQS GM12878 Homo sapiens MA0138.3
BP000587.1 REST ENCSR000BSP MCF-7 Homo sapiens MA0138.3
BP000588.1 REST ENCSR000BTF HL-60 Homo sapiens MA0138.3
BP000589.1 REST ENCSR000BUP Panc1 Homo sapiens MA0138.3
BP000590.1 REST ENCSR000BUU Ishikawa Homo sapiens MA0138.3
BP000591.1 REST ENCSR000BVI HCT116 Homo sapiens MA0138.3
BP000592.1 REST ENCSR054JMQ K562 Homo sapiens MA0138.3
Showing 10 profiles of page 2 from 3 pages