Detailed information of deep learning profile BP000573.1

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This page shows detailed deep learning-derived predictions and motifs for REST in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000573.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BGF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.01 0.01 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.04 -0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.06 0.02 -0.00 -0.01 ]
C [ -0.00 -0.00 0.01 0.05 -0.00 0.21 -0.00 0.00 -0.00 0.23 0.22 -0.01 0.00 0.00 0.00 0.00 0.01 0.19 0.00 -0.00 0.00 0.00 0.01 0.01 ]
G [ 0.01 0.06 0.04 -0.00 0.07 -0.00 0.00 0.12 -0.00 -0.00 -0.00 0.01 -0.00 0.13 0.23 0.00 0.04 0.00 0.00 0.11 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.01 -0.00 0.18 -0.00 0.13 -0.00 -0.00 -0.01 0.02 -0.00 -0.00 0.21 -0.01 -0.00 0.11 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 659 628 623 611 703 610 624 666 573 576 483 510 530 607 685 462 233 827 447 14 6 114 96 7 8 1581 745 129 5 14 426 77 86 300 1568 1179 658 658 653 663 603 688 619 576 573 553 552 550 615 673 ]
C [ 770 779 793 702 699 745 719 704 735 667 776 812 971 779 328 104 553 1185 293 2647 6 408 33 2702 2660 221 223 27 6 13 661 2398 312 209 374 668 761 798 737 710 801 722 786 776 776 800 738 764 760 756 ]
G [ 783 751 711 777 773 789 840 899 717 956 753 839 647 693 994 1867 1573 76 1597 11 8 2202 199 2 6 456 352 2518 2729 8 1424 153 103 2004 605 468 763 638 675 747 734 681 720 696 753 763 733 790 684 684 ]
T [ 533 587 618 655 570 601 562 476 720 546 733 584 597 666 738 312 386 657 408 73 2725 21 2417 34 71 487 1425 71 5 2710 234 117 2244 232 198 430 563 651 680 625 607 654 620 697 643 629 722 641 686 632 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.01 0.00 0.02 -0.06 0.05 0.01 -0.07 -0.10 0.02 -0.01 -0.02 -0.09 0.09 0.02 0.04 -0.02 -0.05 0.04 -0.09 -0.11 -0.01 0.09 0.04 0.01 -0.01 -0.01 ]
C [ 0.02 0.02 0.01 0.01 -0.06 0.05 0.12 -0.01 0.22 -0.05 0.04 -0.07 0.23 0.22 -0.03 0.05 -0.04 -0.03 -0.01 0.06 0.20 0.03 -0.03 0.01 0.02 0.03 0.02 0.03 ]
G [ 0.03 0.02 0.03 0.05 0.08 0.07 -0.11 0.13 -0.08 0.03 0.15 0.03 -0.12 0.01 0.09 0.01 0.14 0.23 -0.09 0.09 0.00 0.02 0.13 0.04 -0.02 0.02 0.02 0.03 ]
T [ -0.01 -0.00 -0.00 0.01 0.00 0.03 0.01 -0.04 0.00 0.18 -0.11 0.14 -0.01 -0.02 -0.03 0.06 -0.04 -0.06 0.21 -0.07 -0.02 0.12 -0.02 -0.07 0.01 0.01 0.02 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 746

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 193

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 101

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 24

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 20

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages