Detailed information of deep learning profile BP000442.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000442.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR979PTL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ -0.00 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.17 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.03 -0.00 0.10 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4505 4598 4426 4346 4472 5266 5085 4676 4662 4752 4098 5028 4919 3949 4128 3611 5943 6977 2262 8126 2125 1097 1729 1635 256 6523 242 179 1515 7418 763 2860 252 1527 3557 4625 6985 5141 5742 4831 4574 4528 5028 4966 5686 7664 6078 4212 4534 4516 ]
C [ 5101 4915 5027 5131 5278 4400 4348 5057 5264 5258 5164 3170 2954 4825 5212 7956 4131 4976 5557 2079 5595 9471 802 16296 18714 10792 11391 18758 1980 1696 6845 3105 285 1583 8155 6133 3130 4826 4011 4522 4652 4317 3658 3309 4506 4395 4640 4582 3881 6060 ]
G [ 4963 4907 4920 4876 4671 4576 4415 4455 4440 5187 3966 6092 7273 6190 5149 3501 3709 4016 4675 6365 9777 1064 13716 937 84 766 200 83 573 6950 10231 1151 17954 14115 2398 4260 6279 4998 4543 5049 5318 5794 6480 7221 4822 3485 3884 4077 5786 4900 ]
T [ 4801 4950 4997 5017 4949 5128 5522 5182 5004 4173 6142 5080 4224 4406 4881 4302 5587 3401 6876 2800 1873 7738 3123 502 316 1289 7537 350 15302 3306 1531 12254 879 2145 5260 4352 2976 4405 5074 4968 4826 4731 4204 3874 4356 3826 4768 6499 5169 3894 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.02 0.01 -0.03 0.03 -0.08 -0.04 -0.03 0.06 -0.05 -0.03 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.02 0.04 0.00 0.03 0.04 0.00 0.06 0.13 -0.02 0.13 0.18 0.10 0.13 0.17 0.04 -0.01 0.06 0.09 -0.02 -0.02 0.06 0.04 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.03 0.02 0.01 0.01 0.02 0.04 0.05 0.07 -0.01 0.14 -0.02 -0.04 0.01 -0.04 -0.01 0.01 0.06 0.12 -0.01 0.18 0.12 -0.01 0.04 0.06 0.03 0.02 0.02 0.03 ]
T [ 0.00 0.00 -0.00 0.01 -0.02 0.03 -0.01 -0.02 0.02 -0.01 -0.05 -0.04 -0.06 0.05 -0.04 0.08 -0.01 -0.02 0.04 -0.02 -0.00 0.02 -0.01 -0.02 0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1862

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 658

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 489

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 234

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000221.1 CTCF ENCSR315NAC LNCAP Homo sapiens MA0139.2
BP000222.1 CTCF ENCSR323ZAP heart right ventricle Homo sapiens MA0139.2
BP000223.1 CTCF ENCSR329KRE middle frontal area 46 Homo sapiens MA0139.2
BP000224.1 CTCF ENCSR331OGX thyroid gland Homo sapiens MA0139.2
BP000225.1 CTCF ENCSR332WTG middle frontal area 46 Homo sapiens MA0139.2
BP000226.1 CTCF ENCSR336VBV A549 Homo sapiens MA0139.2
BP000227.1 CTCF ENCSR341OQG HCT116 Homo sapiens MA0139.2
BP000228.1 CTCF ENCSR343RJH spleen Homo sapiens MA0139.2
BP000229.1 CTCF ENCSR347MXL activated CD8-positive and alpha-beta T cell Homo sapiens MA0139.2
BP000230.1 CTCF ENCSR350NBQ heart left ventricle Homo sapiens MA0139.2
Showing 10 profiles of page 23 from 45 pages