Detailed information of deep learning profile BP000223.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000223.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR329KRE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.12 0.17 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.10 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4555 4326 4576 5285 5085 4771 4696 4853 4226 5085 5078 3980 4276 3764 5963 7066 2459 8046 2296 1294 1772 1698 323 6351 302 249 1626 7498 841 3049 262 1596 3642 4659 6979 5186 5724 5074 4693 4666 5117 5026 5747 7775 6109 4293 4690 4556 5410 5604 ]
C [ 5200 5263 5350 4587 4638 5071 5415 5342 5272 3442 3138 4961 5418 8032 4329 5100 5807 2266 5848 9499 930 16380 18897 11019 11829 18920 2226 1857 6996 3203 319 1682 8378 6283 3283 4920 4234 4634 4782 4530 3894 3504 4640 4523 4749 4744 3936 6185 6482 5009 ]
G [ 4901 5102 4778 4737 4494 4647 4672 5344 4103 6084 7224 6366 5146 3638 3881 4167 4663 6454 9642 1239 13829 1044 165 919 245 125 648 7035 10216 1300 18287 14194 2506 4364 6436 5110 4657 5100 5401 5824 6571 7371 4929 3563 4085 4296 5950 5100 3866 4709 ]
T [ 5116 5081 5068 5163 5555 5283 4989 4233 6171 5161 4332 4465 4932 4338 5599 3439 6843 3006 1986 7740 3241 650 387 1483 7396 478 15272 3382 1719 12220 904 2300 5246 4466 3074 4556 5157 4964 4896 4752 4190 3871 4456 3911 4829 6439 5196 3931 4014 4450 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.02 0.01 -0.03 0.03 -0.07 -0.04 -0.02 0.06 -0.04 -0.03 -0.06 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.02 0.04 0.00 0.02 0.03 0.00 0.05 0.13 -0.03 0.14 0.18 0.10 0.13 0.17 0.04 -0.01 0.05 0.09 -0.03 -0.02 0.06 0.04 0.01 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.02 0.01 0.01 0.02 0.04 0.05 0.08 -0.02 0.14 -0.02 -0.03 0.03 -0.05 -0.01 0.01 0.06 0.12 -0.01 0.18 0.12 -0.00 0.04 0.05 0.03 0.01 0.02 0.02 ]
T [ 0.00 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.03 -0.01 -0.05 -0.05 -0.06 0.06 -0.03 0.08 -0.01 -0.02 0.04 -0.02 -0.00 0.02 -0.02 -0.02 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 951

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 847

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 642

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 580

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 225

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 30

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages