Detailed information of deep learning profile BP000225.1

  1. Home
  2. Deep Learning Profile > BP000225.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000225.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR332WTG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.10 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4585 4484 4643 5381 5168 4810 4797 4918 4276 5092 5078 4011 4293 3766 6099 7130 2539 8307 2366 1259 1869 1704 326 6423 228 191 1556 7730 720 2982 230 1485 3688 4730 7226 5321 5872 5061 4787 4644 5233 5027 5902 7963 6284 4259 4721 4723 5477 5741 ]
C [ 5278 5242 5435 4607 4591 5257 5442 5428 5325 3603 3306 5106 5421 8070 4278 5096 5856 2258 5706 9598 963 16514 19180 11251 12365 19397 1999 1747 7105 3181 301 1643 8447 6382 3254 4949 4140 4649 4796 4558 3796 3423 4639 4521 4662 4717 3940 6213 6660 5023 ]
G [ 5032 5045 4794 4742 4637 4651 4658 5413 4199 6073 7223 6290 5290 3753 3900 4271 4711 6394 9858 1383 13941 1074 126 855 158 68 575 7251 10614 1220 18712 14835 2432 4442 6569 5270 4789 5233 5528 6017 6760 7662 4959 3604 4126 4348 5971 5130 3828 4725 ]
T [ 5099 5223 5122 5264 5598 5276 5097 4235 6194 5226 4387 4587 4990 4405 5717 3497 6888 3035 2064 7754 3221 702 362 1465 7243 338 15864 3266 1555 12611 751 2031 5427 4440 2945 4454 5193 5051 4883 4775 4205 3882 4494 3906 4922 6670 5362 3928 4029 4505 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.02 -0.07 -0.03 0.00 -0.05 0.03 -0.08 -0.05 -0.04 0.07 -0.07 -0.03 -0.09 -0.04 -0.02 -0.01 0.02 0.00 0.01 -0.00 -0.00 ]
C [ 0.02 0.04 0.01 0.03 0.03 -0.00 0.05 0.13 -0.03 0.14 0.19 0.11 0.14 0.19 0.03 -0.02 0.06 0.08 -0.03 -0.03 0.06 0.05 0.01 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.05 0.07 -0.01 0.14 -0.03 -0.04 0.01 -0.06 -0.03 0.01 0.06 0.13 -0.02 0.20 0.13 -0.01 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.06 -0.05 -0.07 0.05 -0.06 0.09 -0.03 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 786

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 360

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 183

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 115

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 53

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages