Detailed information of deep learning profile BP000229.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in activated CD8-positive and alpha-beta T cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000229.1
Cell line/tissue: activated CD8-positive and alpha-beta T cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR347MXL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.14 0.05 0.06 0.14 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3474 3412 3464 3929 3958 3600 3643 3743 3214 3869 3819 3000 3239 2776 4408 5249 1967 6300 1757 1028 1547 1243 207 4717 172 133 1049 5640 576 2535 186 1036 2720 3551 5464 3999 4434 3818 3543 3459 4089 3608 4377 6518 4752 3077 3495 3456 4294 4300 ]
C [ 4049 4078 4161 3679 3566 4052 4152 4068 4058 2791 2644 4109 4048 6247 3474 4025 4508 1752 4076 7305 949 12315 14646 8865 9659 14780 1547 1321 5278 2204 243 1154 6522 4892 2450 3828 3243 3467 3576 3508 2827 2561 3569 3409 3704 3611 2857 5133 5254 3832 ]
G [ 3901 3869 3690 3654 3588 3559 3652 4097 3402 4646 5454 4647 4018 2904 3008 3080 3553 4774 7705 1280 10304 1094 132 615 173 91 462 5830 8162 1099 14288 11463 1773 3415 5002 3951 3655 4035 4351 4679 5238 6204 3723 2544 3011 3175 4801 3815 2708 3686 ]
T [ 3804 3869 3913 3966 4116 4017 3781 3320 4554 3922 3311 3472 3923 3301 4338 2874 5200 2402 1690 5615 2428 576 243 1031 5224 224 12170 2437 1212 9390 511 1575 4213 3370 2312 3450 3896 3908 3758 3582 3074 2855 3559 2757 3761 5365 4075 2824 2972 3410 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.00 -0.04 0.02 -0.06 -0.04 -0.03 0.05 -0.05 -0.02 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 ]
C [ 0.01 0.03 -0.00 0.01 0.02 -0.01 0.03 0.10 -0.02 0.11 0.14 0.08 0.11 0.15 0.02 -0.02 0.04 0.06 -0.02 -0.02 0.04 0.03 -0.00 0.01 0.00 0.01 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.03 0.05 -0.02 0.10 -0.03 -0.03 -0.00 -0.05 -0.02 -0.01 0.04 0.10 -0.02 0.15 0.10 -0.01 0.03 0.04 0.01 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.04 -0.05 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 492

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages