Detailed information of deep learning profile BP000442.1

  1. Home
  2. Deep Learning Profile > BP000442.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000442.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR979PTL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.10 -0.00 0.03 0.01 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.17 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 -0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 3894 5169 6499 4768 3826 4356 3874 4204 4731 4826 4968 5074 4405 2976 4352 5260 2145 879 12254 1531 3306 15302 350 7537 1289 316 502 3123 7738 1873 2800 6876 3401 5587 4302 4881 4406 4224 5080 6142 4173 5004 5182 5522 5128 4949 5017 4997 4950 4801 ]
C [ 4900 5786 4077 3884 3485 4822 7221 6480 5794 5318 5049 4543 4998 6279 4260 2398 14115 17954 1151 10231 6950 573 83 200 766 84 937 13716 1064 9777 6365 4675 4016 3709 3501 5149 6190 7273 6092 3966 5187 4440 4455 4415 4576 4671 4876 4920 4907 4963 ]
G [ 6060 3881 4582 4640 4395 4506 3309 3658 4317 4652 4522 4011 4826 3130 6133 8155 1583 285 3105 6845 1696 1980 18758 11391 10792 18714 16296 802 9471 5595 2079 5557 4976 4131 7956 5212 4825 2954 3170 5164 5258 5264 5057 4348 4400 5278 5131 5027 4915 5101 ]
T [ 4516 4534 4212 6078 7664 5686 4966 5028 4528 4574 4831 5742 5141 6985 4625 3557 1527 252 2860 763 7418 1515 179 242 6523 256 1635 1729 1097 2125 8126 2262 6977 5943 3611 4128 3949 4919 5028 4098 4752 4662 4676 5085 5266 4472 4346 4426 4598 4505 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 0.00 -0.02 -0.01 0.02 -0.00 -0.02 0.04 -0.02 -0.01 0.08 -0.04 0.05 -0.06 -0.04 -0.05 -0.01 0.02 -0.02 -0.01 0.03 -0.02 0.01 -0.00 0.00 0.00 ]
C [ 0.03 0.02 0.02 0.03 0.06 0.04 -0.01 0.12 0.18 -0.01 0.12 0.06 0.01 -0.01 -0.04 0.01 -0.04 -0.02 0.14 -0.01 0.07 0.05 0.04 0.02 0.01 0.01 0.02 0.03 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.04 0.06 -0.02 -0.02 0.09 0.06 -0.01 0.04 0.17 0.13 0.10 0.18 0.13 -0.02 0.13 0.06 0.00 0.04 0.03 0.00 0.04 0.02 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.03 -0.05 0.06 -0.03 -0.04 -0.08 0.03 -0.03 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1862

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 658

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 489

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 234

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages