Detailed information of deep learning profile BP000222.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000222.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR323ZAP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.06 0.16 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4412 3905 3762 5189 6394 4757 3686 4389 3783 4030 4712 4788 4845 4932 4232 3068 4391 5190 2216 903 11544 1644 3222 15091 343 6549 1727 488 853 3515 7076 2120 3185 6423 3548 5465 4194 4891 4323 4316 4812 5747 4171 4810 5066 5237 4993 4971 4896 4930 ]
C [ 4735 3791 5087 5975 4279 4185 3729 4971 7659 6713 5905 5420 5191 4791 5351 6602 4410 2555 14309 18022 1455 9987 7379 619 110 211 953 244 1498 12864 1778 9470 6117 4685 4189 4011 3848 5189 6099 6889 5997 4401 5305 4729 4664 4621 4722 4932 5063 4992 ]
G [ 4967 6506 6404 3948 4846 4762 4570 4634 3444 3930 4493 4787 4682 4173 4936 3262 6166 8200 1681 378 3175 7160 1933 2284 18956 12516 11183 18453 15567 1253 9308 5523 2435 5819 5190 4391 7969 5378 5197 3667 3859 5231 5391 5390 5275 4790 4820 5319 5328 5204 ]
T [ 5487 5399 4348 4489 4082 5897 7616 5607 4715 4928 4491 4606 4883 5705 5082 6669 4634 3656 1395 298 3427 810 7067 1607 192 325 5738 416 1683 1969 1439 2488 7864 2674 6674 5734 3590 4143 3982 4729 4933 4222 4734 4672 4596 4953 5066 4379 4314 4475 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.03 -0.03 -0.02 0.09 -0.05 0.04 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.05 0.03 -0.02 0.12 0.18 -0.02 0.11 0.05 -0.01 -0.03 -0.07 -0.01 -0.05 -0.03 0.12 -0.02 0.06 0.04 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 -0.00 0.04 0.05 -0.03 -0.03 0.06 0.05 -0.03 0.02 0.17 0.13 0.10 0.16 0.12 -0.03 0.12 0.04 -0.01 0.02 0.02 0.00 0.04 0.02 ]
T [ 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.05 -0.03 -0.04 -0.07 0.02 -0.04 0.00 -0.03 -0.06 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 337

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 115

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages