Detailed information of deep learning profile BP000386.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in foreskin keratinocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000386.1
Cell line/tissue: foreskin keratinocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR817HTJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.12 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.05 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.12 0.06 0.04 0.11 0.07 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5025 4649 4265 5657 6663 5445 4352 5021 4150 4617 5196 5328 5014 5346 4769 3573 5021 5790 2698 1601 11532 2235 3679 15230 530 6231 2809 728 1271 4274 7384 2640 3712 6806 3907 5731 4609 5343 4845 4721 5415 6187 4910 5332 5530 5692 5467 5426 5383 5422 ]
C [ 4808 3977 5247 6013 4630 4394 3883 5069 7737 6848 6133 5529 5322 4909 5864 6831 4783 2910 14325 18236 1648 9765 7563 637 138 252 986 329 1719 12252 2100 9364 6236 4843 4404 4264 4128 5240 6250 7092 5919 4458 5161 4964 4827 4881 4911 4940 5000 5135 ]
G [ 5140 6410 6505 4111 4827 4781 4755 4643 3648 4004 4456 4853 4881 4359 4867 3431 5891 7900 2079 436 3105 7676 2347 2806 19692 13820 10653 18909 15733 1666 9531 5718 2721 6045 5427 4719 7673 5638 5317 3912 4030 5363 5580 5416 5210 4960 5062 5445 5567 5241 ]
T [ 5781 5718 4737 4973 4634 6134 7764 6021 5219 5285 4969 5044 5537 6140 5254 6919 5059 4154 1652 481 4469 1078 7165 2081 394 451 6306 788 2031 2562 1739 3032 8085 3060 7016 6040 4344 4533 4342 5029 5390 4746 5103 5042 5187 5221 5314 4943 4804 4956 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.01 0.02 -0.01 -0.02 0.02 -0.02 -0.01 0.06 -0.03 0.03 -0.04 -0.04 -0.03 -0.01 0.02 -0.02 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.03 0.02 -0.01 0.08 0.13 -0.01 0.08 0.04 -0.01 -0.03 -0.05 -0.00 -0.03 -0.02 0.08 -0.01 0.05 0.03 0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 -0.00 0.02 0.03 -0.02 -0.03 0.05 0.04 -0.01 0.02 0.13 0.10 0.07 0.12 0.09 -0.01 0.09 0.03 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.01 0.01 -0.00 -0.01 -0.03 -0.06 -0.01 -0.04 0.04 -0.02 -0.03 -0.04 0.02 -0.02 0.00 -0.01 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 129

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 113

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000061.1 CTCF ENCSR000DPV AG10803 Homo sapiens MA0139.2
BP000062.1 CTCF ENCSR000DPY fibroblast of the aortic adventitia Homo sapiens MA0139.2
BP000063.1 CTCF ENCSR000DQD BE2C Homo sapiens MA0139.2
BP000064.1 CTCF ENCSR000DQI BJ Homo sapiens MA0139.2
BP000065.1 CTCF ENCSR000DQN Caco-2 Homo sapiens MA0139.2
BP000066.1 CTCF ENCSR000DQW GM06990 Homo sapiens MA0139.2
BP000067.1 CTCF ENCSR000DQY GM12801 Homo sapiens MA0139.2
BP000068.1 CTCF ENCSR000DRB GM12864 Homo sapiens MA0139.2
BP000069.1 CTCF ENCSR000DRE GM12865 Homo sapiens MA0139.2
BP000070.1 CTCF ENCSR000DRN GM12872 Homo sapiens MA0139.2
Showing 10 profiles of page 7 from 45 pages