Detailed information of deep learning profile BP000386.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in foreskin keratinocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000386.1
Cell line/tissue: foreskin keratinocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR817HTJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.07 0.11 0.04 0.06 0.12 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.05 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.12 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4956 4804 4943 5314 5221 5187 5042 5103 4746 5390 5029 4342 4533 4344 6040 7016 3060 8085 3032 1739 2562 2031 788 6306 451 394 2081 7165 1078 4469 481 1652 4154 5059 6919 5254 6140 5537 5044 4969 5285 5219 6021 7764 6134 4634 4973 4737 5718 5781 ]
C [ 5241 5567 5445 5062 4960 5210 5416 5580 5363 4030 3912 5317 5638 7673 4719 5427 6045 2721 5718 9531 1666 15733 18909 10653 13820 19692 2806 2347 7676 3105 436 2079 7900 5891 3431 4867 4359 4881 4853 4456 4004 3648 4643 4755 4781 4827 4111 6505 6410 5140 ]
G [ 5135 5000 4940 4911 4881 4827 4964 5161 4458 5919 7092 6250 5240 4128 4264 4404 4843 6236 9364 2100 12252 1719 329 986 252 138 637 7563 9765 1648 18236 14325 2910 4783 6831 5864 4909 5322 5529 6133 6848 7737 5069 3883 4394 4630 6013 5247 3977 4808 ]
T [ 5422 5383 5426 5467 5692 5530 5332 4910 6187 5415 4721 4845 5343 4609 5731 3907 6806 3712 2640 7384 4274 1271 728 2809 6231 530 15230 3679 2235 11532 1601 2698 5790 5021 3573 4769 5346 5014 5328 5196 4617 4150 5021 4352 5445 6663 5657 4265 4649 5025 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.01 0.00 -0.02 0.02 -0.04 -0.03 -0.02 0.04 -0.04 -0.01 -0.06 -0.03 -0.01 -0.00 0.01 0.01 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.03 0.09 -0.01 0.09 0.12 0.07 0.10 0.13 0.02 -0.01 0.04 0.05 -0.03 -0.02 0.03 0.02 -0.00 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.03 0.03 0.05 -0.01 0.08 -0.02 -0.03 -0.00 -0.05 -0.03 -0.01 0.04 0.08 -0.01 0.13 0.08 -0.01 0.02 0.03 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.02 0.02 -0.01 -0.03 -0.04 -0.04 0.03 -0.03 0.06 -0.01 -0.02 0.02 -0.02 -0.01 0.02 -0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 129

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 113

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages