Detailed information of deep learning profile BP000320.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000320.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR601FEB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.15 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3983 3942 4040 4821 4605 4293 4285 4407 3688 4458 4400 3512 3720 3257 5257 6232 2118 7506 1913 1013 1666 1510 252 5856 210 140 1100 6701 631 2550 198 1259 3237 4322 6580 4705 5353 4575 4125 4132 4670 4491 5267 7322 5586 3639 4151 4011 4919 5100 ]
C [ 4961 4869 5049 4341 4192 4755 5017 4845 4809 3143 3029 4595 4875 7506 4084 4784 5287 2055 5321 8914 854 15032 17237 10196 11053 17515 1636 1643 6250 2968 248 1353 7719 5843 2950 4576 3847 4135 4362 4147 3337 3152 4249 4144 4425 4385 3477 5912 6184 4658 ]
G [ 4576 4622 4383 4206 4101 4261 4272 5013 3871 5749 6778 5803 4845 3376 3504 3733 4386 5803 8950 1171 12769 958 197 833 184 99 581 6760 9908 1045 16982 13603 2129 3936 5842 4607 4206 4675 5072 5399 6216 7011 4368 3132 3640 3785 5591 4736 3388 4328 ]
T [ 4482 4569 4530 4634 5104 4693 4428 3737 5634 4652 3795 4092 4562 3863 5157 3253 6211 2638 1818 6904 2713 502 316 1117 6555 248 14685 2898 1213 11439 574 1787 4917 3901 2630 4114 4596 4617 4443 4324 3779 3348 4118 3404 4351 6193 4783 3343 3511 3916 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.06 -0.02 0.00 -0.04 0.02 -0.06 -0.04 -0.04 0.05 -0.06 -0.03 -0.07 -0.03 -0.02 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.04 0.11 -0.02 0.12 0.15 0.09 0.12 0.15 0.02 -0.02 0.04 0.07 -0.02 -0.02 0.05 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.03 0.06 -0.02 0.11 -0.03 -0.04 -0.01 -0.06 -0.01 -0.01 0.04 0.10 -0.02 0.16 0.11 -0.01 0.04 0.04 0.01 0.01 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.05 -0.04 -0.06 0.04 -0.05 0.08 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 623

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 358

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 342

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000061.1 CTCF ENCSR000DPV AG10803 Homo sapiens MA0139.2
BP000062.1 CTCF ENCSR000DPY fibroblast of the aortic adventitia Homo sapiens MA0139.2
BP000063.1 CTCF ENCSR000DQD BE2C Homo sapiens MA0139.2
BP000064.1 CTCF ENCSR000DQI BJ Homo sapiens MA0139.2
BP000065.1 CTCF ENCSR000DQN Caco-2 Homo sapiens MA0139.2
BP000066.1 CTCF ENCSR000DQW GM06990 Homo sapiens MA0139.2
BP000067.1 CTCF ENCSR000DQY GM12801 Homo sapiens MA0139.2
BP000068.1 CTCF ENCSR000DRB GM12864 Homo sapiens MA0139.2
BP000069.1 CTCF ENCSR000DRE GM12865 Homo sapiens MA0139.2
BP000070.1 CTCF ENCSR000DRN GM12872 Homo sapiens MA0139.2
Showing 10 profiles of page 7 from 45 pages