Detailed information of deep learning profile BP000320.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000320.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR601FEB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.15 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3916 3511 3343 4783 6193 4351 3404 4118 3348 3779 4324 4443 4617 4596 4114 2630 3901 4917 1787 574 11439 1213 2898 14685 248 6555 1117 316 502 2713 6904 1818 2638 6211 3253 5157 3863 4562 4092 3795 4652 5634 3737 4428 4693 5104 4634 4530 4569 4482 ]
C [ 4328 3388 4736 5591 3785 3640 3132 4368 7011 6216 5399 5072 4675 4206 4607 5842 3936 2129 13603 16982 1045 9908 6760 581 99 184 833 197 958 12769 1171 8950 5803 4386 3733 3504 3376 4845 5803 6778 5749 3871 5013 4272 4261 4101 4206 4383 4622 4576 ]
G [ 4658 6184 5912 3477 4385 4425 4144 4249 3152 3337 4147 4362 4135 3847 4576 2950 5843 7719 1353 248 2968 6250 1643 1636 17515 11053 10196 17237 15032 854 8914 5321 2055 5287 4784 4084 7506 4875 4595 3029 3143 4809 4845 5017 4755 4192 4341 5049 4869 4961 ]
T [ 5100 4919 4011 4151 3639 5586 7322 5267 4491 4670 4132 4125 4575 5353 4705 6580 4322 3237 1259 198 2550 631 6701 1100 140 210 5856 252 1510 1666 1013 1913 7506 2118 6232 5257 3257 3720 3512 4400 4458 3688 4407 4285 4293 4605 4821 4040 3942 3983 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.08 -0.05 0.04 -0.06 -0.04 -0.05 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.01 0.01 0.04 0.04 -0.01 0.11 0.16 -0.02 0.10 0.04 -0.01 -0.01 -0.06 -0.01 -0.04 -0.03 0.11 -0.02 0.06 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.02 0.07 0.04 -0.02 0.02 0.15 0.12 0.09 0.15 0.12 -0.02 0.11 0.04 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.07 -0.03 -0.06 0.05 -0.04 -0.04 -0.06 0.02 -0.04 0.00 -0.02 -0.06 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 623

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 358

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 342

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages