Detailed information of deep learning profile BP000189.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in transverse colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000189.1
Cell line/tissue: transverse colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR236YGF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.05 0.04 0.13 0.08 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4198 3653 3495 5100 6782 4722 3502 4385 3551 3879 4568 4747 4905 4918 4322 2658 4182 5187 1812 519 12473 1242 2906 15685 281 7091 1247 371 668 2998 7414 1998 2823 6679 3405 5553 4049 4760 4333 4032 4954 6090 4067 4792 5027 5369 4965 4850 4924 4834 ]
C [ 4507 3320 4831 5983 3895 3677 3058 4499 7783 6681 5909 5343 4849 4444 4940 6270 3989 2110 14587 18086 1005 10686 7331 539 85 181 795 245 1229 13062 1417 9337 6088 4505 3913 3592 3479 5132 6148 7115 5945 3971 5193 4393 4237 4318 4380 4541 4862 4780 ]
G [ 4825 6465 6356 3449 4462 4485 4047 4268 2939 3310 4174 4361 4207 3823 4627 2865 6241 8142 1304 187 2843 6449 1478 1667 18448 11450 10646 17979 15428 1082 8986 5472 2134 5537 4959 4225 7914 5064 4697 2978 3181 4976 5050 5172 4929 4269 4395 5174 4958 4990 ]
T [ 5424 5516 4272 4422 3815 6070 8347 5802 4681 5084 4303 4503 4993 5769 5065 7161 4542 3515 1251 162 2633 577 7239 1063 140 232 6266 359 1629 1812 1137 2147 7909 2233 6677 5584 3512 3998 3776 4829 4874 3917 4644 4597 4761 4998 5214 4389 4210 4350 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 0.00 -0.02 -0.02 0.02 -0.01 -0.02 0.03 -0.02 -0.01 0.07 -0.04 0.04 -0.05 -0.04 -0.04 -0.01 0.01 -0.02 -0.02 0.02 -0.02 0.01 -0.01 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.10 0.14 -0.03 0.09 0.04 0.00 -0.01 -0.05 0.00 -0.03 -0.02 0.09 -0.02 0.05 0.03 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.02 0.06 0.04 -0.01 0.01 0.14 0.10 0.08 0.13 0.10 -0.02 0.10 0.03 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.01 -0.01 -0.01 -0.03 -0.06 -0.02 -0.05 0.05 -0.03 -0.04 -0.06 0.02 -0.03 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 287

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000061.1 CTCF ENCSR000DPV AG10803 Homo sapiens MA0139.2
BP000062.1 CTCF ENCSR000DPY fibroblast of the aortic adventitia Homo sapiens MA0139.2
BP000063.1 CTCF ENCSR000DQD BE2C Homo sapiens MA0139.2
BP000064.1 CTCF ENCSR000DQI BJ Homo sapiens MA0139.2
BP000065.1 CTCF ENCSR000DQN Caco-2 Homo sapiens MA0139.2
BP000066.1 CTCF ENCSR000DQW GM06990 Homo sapiens MA0139.2
BP000067.1 CTCF ENCSR000DQY GM12801 Homo sapiens MA0139.2
BP000068.1 CTCF ENCSR000DRB GM12864 Homo sapiens MA0139.2
BP000069.1 CTCF ENCSR000DRE GM12865 Homo sapiens MA0139.2
BP000070.1 CTCF ENCSR000DRN GM12872 Homo sapiens MA0139.2
Showing 10 profiles of page 7 from 45 pages