Detailed information of deep learning profile BP000189.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in transverse colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000189.1
Cell line/tissue: transverse colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR236YGF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.08 0.13 0.04 0.05 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4350 4210 4389 5214 4998 4761 4597 4644 3917 4874 4829 3776 3998 3512 5584 6677 2233 7909 2147 1137 1812 1629 359 6266 232 140 1063 7239 577 2633 162 1251 3515 4542 7161 5065 5769 4993 4503 4303 5084 4681 5802 8347 6070 3815 4422 4272 5516 5424 ]
C [ 4990 4958 5174 4395 4269 4929 5172 5050 4976 3181 2978 4697 5064 7914 4225 4959 5537 2134 5472 8986 1082 15428 17979 10646 11450 18448 1667 1478 6449 2843 187 1304 8142 6241 2865 4627 3823 4207 4361 4174 3310 2939 4268 4047 4485 4462 3449 6356 6465 4825 ]
G [ 4780 4862 4541 4380 4318 4237 4393 5193 3971 5945 7115 6148 5132 3479 3592 3913 4505 6088 9337 1417 13062 1229 245 795 181 85 539 7331 10686 1005 18086 14587 2110 3989 6270 4940 4444 4849 5343 5909 6681 7783 4499 3058 3677 3895 5983 4831 3320 4507 ]
T [ 4834 4924 4850 4965 5369 5027 4792 4067 6090 4954 4032 4333 4760 4049 5553 3405 6679 2823 1998 7414 2998 668 371 1247 7091 281 15685 2906 1242 12473 519 1812 5187 4182 2658 4322 4918 4905 4747 4568 3879 3551 4385 3502 4722 6782 5100 3495 3653 4198 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.03 0.02 -0.06 -0.04 -0.03 0.05 -0.05 -0.02 -0.06 -0.03 -0.01 -0.01 0.01 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.03 0.10 -0.02 0.10 0.13 0.08 0.10 0.14 0.01 -0.01 0.04 0.06 -0.02 -0.02 0.05 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.03 0.05 -0.02 0.09 -0.02 -0.03 0.00 -0.05 -0.01 0.00 0.04 0.09 -0.03 0.14 0.10 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.01 -0.01 -0.04 -0.04 -0.05 0.04 -0.04 0.07 -0.01 -0.02 0.03 -0.02 -0.01 0.02 -0.02 -0.02 0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 287

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages