Detailed information of deep learning profile BP001064.1

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This page shows detailed deep learning-derived predictions and motifs for STAT1 in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: STAT1
Model ID: BP001064.1
Cell line/tissue: HeLa-S3
Class: STAT domain factors
Family: STAT factors
JASPAR ID: MA0137.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q53XW4  
Source: ENCSR000EZK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.01 0.00 -0.00 0.11 0.12 0.02 -0.00 -0.00 0.00 ]
C [ 0.01 0.01 -0.00 0.00 -0.00 -0.00 0.07 0.04 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.01 0.00 ]
G [ 0.00 0.01 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.08 0.08 -0.00 -0.00 0.00 -0.00 0.01 0.01 ]
T [ 0.00 -0.00 -0.00 0.02 0.11 0.09 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 2551 2590 2639 2648 2416 2211 2307 2936 2411 3112 3102 2345 2538 2579 2856 1951 1968 2021 1421 3792 1069 102 310 2010 582 3546 786 233 9386 9418 4843 1426 1773 2586 2016 2271 2540 2033 2287 2135 2660 2408 1916 1879 2177 2050 2195 2860 2488 3534 ]
C [ 1969 2049 2124 2068 2083 2084 1870 1972 1948 1898 1744 2004 2167 2763 2490 2622 2637 2326 3279 1355 2261 124 38 7031 4322 628 17 52 51 6 999 1934 2519 2460 2891 2519 1946 2530 2452 2883 2305 1927 2055 2175 3299 3192 2562 1836 1812 1951 ]
G [ 2455 2408 2402 2369 2215 3054 3128 2598 2580 1931 2481 2570 2036 2073 1962 2090 2913 2017 3109 2149 1464 56 967 143 366 3864 8576 8489 8 26 1811 1886 3887 2906 2627 2163 2544 2841 2635 2141 1820 1957 1839 1841 1933 2088 2237 2699 3185 1950 ]
T [ 2499 2427 2309 2389 2760 2125 2169 1968 2535 2533 2147 2555 2733 2059 2166 2811 1956 3110 1665 2178 4680 9192 8159 290 4204 1436 95 700 29 24 1821 4228 1295 1522 1940 2521 2444 2070 2100 2315 2689 3182 3664 3579 2065 2144 2480 2079 1989 2039 ]

Hypothetical CWM

   
A [ 0.00 -0.01 -0.00 -0.02 -0.02 0.02 -0.01 -0.04 -0.03 0.02 -0.06 -0.02 0.02 -0.04 0.11 0.12 0.03 -0.01 -0.01 0.00 -0.01 0.00 -0.01 ]
C [ 0.01 0.02 0.02 0.03 0.03 -0.00 0.01 -0.06 -0.10 0.08 0.09 0.04 -0.03 -0.07 -0.01 -0.06 -0.01 0.02 0.03 0.02 0.02 0.02 0.02 ]
G [ 0.01 0.01 0.02 0.01 0.03 0.02 -0.01 -0.05 -0.01 -0.06 -0.03 0.04 0.09 0.08 -0.11 -0.06 0.01 -0.00 0.03 0.03 0.02 0.02 0.01 ]
T [ -0.01 0.00 -0.01 0.00 -0.01 -0.01 0.03 0.11 0.09 -0.04 0.01 -0.02 -0.06 0.02 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 -0.00 -0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2714

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 966

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 166

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 150

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 113

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 96

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 39

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 30

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 28

CWM

PFM

     

HCWM

4 profiles found for the same TF (STAT1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001062.1 STAT1 ENCSR000EHJ K562 Homo sapiens MA0137.4
BP001063.1 STAT1 ENCSR000EHK K562 Homo sapiens MA0137.4
BP001065.1 STAT1 ENCSR000FAU K562 Homo sapiens MA0517.2
BP001066.1 STAT1 ENCSR000FAV K562 Homo sapiens MA0137.4
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