JASPAR - STAT1 - BP001062.1

This page shows detailed deep learning-derived predictions and motifs for STAT1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	STAT1
Model ID:	BP001062.1
Cell line/tissue:	K562
Class:	STAT domain factors
Family:	STAT factors
JASPAR ID:	MA0137.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q53XW4
Source:	ENCSR000EHJ
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 1863

Contribution weight matrix (CWM)

A [	-0.00	-0.00	0.01	-0.00	0.00	-0.00	0.00	-0.00	-0.01	0.00	-0.00	0.08	0.09	0.01	-0.00	-0.00	0.00	]
C [	0.01	0.01	-0.00	0.00	-0.00	-0.00	0.05	0.03	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.01	0.00	]
G [	0.00	0.01	0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.01	0.05	0.04	-0.00	-0.00	0.00	-0.00	0.01	0.00	]
T [	0.01	-0.00	-0.00	0.02	0.11	0.08	-0.00	0.00	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	]

Frequency matrix

A [	500	435	419	461	439	475	479	391	390	587	545	647	545	430	456	457	511	386	318	280	225	764	140	0	49	193	85	510	206	92	1774	1831	794	353	270	504	406	478	462	382	435	463	436	505	415	372	387	387	486	501	]
C [	512	449	392	429	524	492	408	434	405	445	403	402	336	439	528	655	599	516	552	568	651	352	483	2	34	1606	1095	414	30	39	51	7	303	436	572	528	643	465	395	481	505	608	483	407	476	463	694	688	525	439	]
G [	427	462	483	470	454	462	506	656	688	519	493	360	548	584	433	447	380	468	592	384	679	463	259	1	60	23	75	561	1582	1521	16	16	472	341	822	481	469	494	509	596	516	426	400	371	384	398	415	422	408	503	]
T [	424	517	569	503	446	434	470	382	380	312	422	454	434	410	446	304	373	493	401	631	308	284	981	1860	1720	41	608	378	45	211	22	9	294	733	199	350	345	426	497	404	407	366	544	580	588	630	367	366	444	420	]

Hypothetical CWM

A [	-0.00	-0.02	-0.02	0.01	-0.03	-0.04	-0.02	0.02	-0.04	-0.02	0.01	-0.03	0.08	0.09	0.03	-0.01	-0.01	0.01	-0.01	-0.00	-0.01	]
C [	0.00	0.02	0.02	-0.00	0.02	-0.05	-0.05	0.05	0.06	0.03	-0.02	-0.04	-0.03	-0.04	-0.01	0.02	0.02	0.00	0.02	0.01	0.01	]
G [	0.02	0.00	0.02	0.02	-0.01	-0.04	-0.03	-0.04	-0.01	0.03	0.06	0.05	-0.06	-0.05	0.02	-0.00	0.02	0.02	0.01	0.01	0.00	]
T [	-0.00	0.01	-0.01	-0.01	0.03	0.11	0.08	-0.03	0.01	-0.02	-0.04	0.03	-0.02	-0.04	-0.03	0.01	-0.02	-0.02	-0.00	-0.01	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 24

CWM

PFM

HCWM

4 profiles found for the same TF (STAT1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001063.1	STAT1	ENCSR000EHK	K562	Homo sapiens	MA0137.4
BP001064.1	STAT1	ENCSR000EZK	HeLa-S3	Homo sapiens	MA0137.4
BP001065.1	STAT1	ENCSR000FAU	K562	Homo sapiens	MA0517.2
BP001066.1	STAT1	ENCSR000FAV	K562	Homo sapiens	MA0137.4