Detailed information of deep learning profile BP001064.1

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This page shows detailed deep learning-derived predictions and motifs for STAT1 in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: STAT1
Model ID: BP001064.1
Cell line/tissue: HeLa-S3
Class: STAT domain factors
Family: STAT factors
JASPAR ID: MA0137.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q53XW4  
Source: ENCSR000EZK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.09 0.11 0.02 -0.00 -0.00 0.00 ]
C [ 0.01 0.01 -0.00 0.00 -0.00 -0.00 0.08 0.08 0.01 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.01 0.00 ]
G [ 0.00 0.01 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.04 0.07 -0.00 -0.00 0.00 -0.00 0.01 0.01 ]
T [ 0.00 -0.00 -0.00 0.02 0.12 0.11 -0.00 0.00 -0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.01 ]

Frequency matrix

       
A [ 2039 1989 2079 2480 2144 2065 3579 3664 3182 2689 2315 2100 2070 2444 2521 1940 1522 1295 4228 1821 24 29 700 95 1436 4204 290 8159 9192 4680 2178 1665 3110 1956 2811 2166 2059 2733 2555 2147 2533 2535 1968 2169 2125 2760 2389 2309 2427 2499 ]
C [ 1950 3185 2699 2237 2088 1933 1841 1839 1957 1820 2141 2635 2841 2544 2163 2627 2906 3887 1886 1811 26 8 8489 8576 3864 366 143 967 56 1464 2149 3109 2017 2913 2090 1962 2073 2036 2570 2481 1931 2580 2598 3128 3054 2215 2369 2402 2408 2455 ]
G [ 1951 1812 1836 2562 3192 3299 2175 2055 1927 2305 2883 2452 2530 1946 2519 2891 2460 2519 1934 999 6 51 52 17 628 4322 7031 38 124 2261 1355 3279 2326 2637 2622 2490 2763 2167 2004 1744 1898 1948 1972 1870 2084 2083 2068 2124 2049 1969 ]
T [ 3534 2488 2860 2195 2050 2177 1879 1916 2408 2660 2135 2287 2033 2540 2271 2016 2586 1773 1426 4843 9418 9386 233 786 3546 582 2010 310 102 1069 3792 1421 2021 1968 1951 2856 2579 2538 2345 3102 3112 2411 2936 2307 2211 2416 2648 2639 2590 2551 ]

Hypothetical CWM

   
A [ 0.00 -0.01 -0.00 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 0.02 -0.06 -0.02 0.01 -0.04 0.09 0.11 0.03 -0.01 -0.01 0.00 -0.01 0.00 -0.01 ]
C [ 0.01 0.02 0.02 0.03 0.03 -0.00 0.01 -0.06 -0.11 0.08 0.09 0.04 -0.03 -0.06 -0.01 -0.05 -0.01 0.02 0.03 0.01 0.02 0.01 0.01 ]
G [ 0.02 0.02 0.02 0.02 0.03 0.02 -0.01 -0.06 -0.01 -0.07 -0.03 0.04 0.09 0.08 -0.10 -0.06 0.01 -0.00 0.03 0.03 0.02 0.02 0.01 ]
T [ -0.01 0.00 -0.01 0.00 -0.01 -0.01 0.03 0.12 0.11 -0.04 0.02 -0.02 -0.06 0.02 -0.03 -0.04 -0.01 0.02 -0.02 -0.02 -0.00 -0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2714

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 966

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 166

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 150

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 113

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 96

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 39

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 30

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 28

CWM

PFM

     

HCWM

4 profiles found for the same TF (STAT1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001062.1 STAT1 ENCSR000EHJ K562 Homo sapiens MA0137.4
BP001063.1 STAT1 ENCSR000EHK K562 Homo sapiens MA0137.4
BP001065.1 STAT1 ENCSR000FAU K562 Homo sapiens MA0517.2
BP001066.1 STAT1 ENCSR000FAV K562 Homo sapiens MA0137.4
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