JASPAR - STAT1 - BP001062.1

This page shows detailed deep learning-derived predictions and motifs for STAT1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	STAT1
Model ID:	BP001062.1
Cell line/tissue:	K562
Class:	STAT domain factors
Family:	STAT factors
JASPAR ID:	MA0137.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q53XW4
Source:	ENCSR000EHJ
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 1863

Contribution weight matrix (CWM)

A [	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.00	-0.00	0.08	0.11	0.02	-0.00	-0.00	0.01	]
C [	0.00	0.01	-0.00	0.00	-0.00	-0.00	0.04	0.05	0.01	-0.00	-0.00	-0.00	0.00	-0.00	0.00	0.01	0.00	]
G [	0.00	0.01	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.03	0.05	-0.00	-0.00	0.00	-0.00	0.01	0.01	]
T [	0.00	-0.00	-0.00	0.01	0.09	0.08	-0.00	0.00	-0.01	-0.00	0.00	-0.00	0.00	-0.00	0.01	-0.00	-0.00	]

Frequency matrix

A [	420	444	366	367	630	588	580	544	366	407	404	497	426	345	350	199	733	294	9	22	211	45	378	608	41	1720	1860	981	284	308	631	401	493	373	304	446	410	434	454	422	312	380	382	470	434	446	503	569	517	424	]
C [	503	408	422	415	398	384	371	400	426	516	596	509	494	469	481	822	341	472	16	16	1521	1582	561	75	23	60	1	259	463	679	384	592	468	380	447	433	584	548	360	493	519	688	656	506	462	454	470	483	462	427	]
G [	439	525	688	694	463	476	407	483	608	505	481	395	465	643	528	572	436	303	7	51	39	30	414	1095	1606	34	2	483	352	651	568	552	516	599	655	528	439	336	402	403	445	405	434	408	492	524	429	392	449	512	]
T [	501	486	387	387	372	415	505	436	463	435	382	462	478	406	504	270	353	794	1831	1774	92	206	510	85	193	49	0	140	764	225	280	318	386	511	457	456	430	545	647	545	587	390	391	479	475	439	461	419	435	500	]

Hypothetical CWM

A [	0.00	-0.01	-0.00	-0.02	-0.02	0.01	-0.03	-0.04	-0.02	0.03	-0.04	-0.02	0.01	-0.03	0.08	0.11	0.03	-0.01	-0.01	0.01	-0.00	]
C [	0.00	0.01	0.01	0.02	0.02	-0.00	0.02	-0.05	-0.06	0.05	0.06	0.03	-0.01	-0.04	-0.03	-0.04	-0.01	0.02	0.02	0.00	0.02	]
G [	0.01	0.01	0.02	0.00	0.02	0.02	-0.01	-0.04	-0.03	-0.04	-0.02	0.03	0.06	0.05	-0.05	-0.05	0.02	-0.00	0.02	0.02	0.00	]
T [	-0.01	-0.00	-0.01	0.01	-0.01	-0.01	0.03	0.09	0.08	-0.03	0.01	-0.02	-0.04	0.02	-0.02	-0.04	-0.03	0.01	-0.02	-0.02	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 24

CWM

PFM

HCWM

4 profiles found for the same TF (STAT1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001063.1	STAT1	ENCSR000EHK	K562	Homo sapiens	MA0137.4
BP001064.1	STAT1	ENCSR000EZK	HeLa-S3	Homo sapiens	MA0137.4
BP001065.1	STAT1	ENCSR000FAU	K562	Homo sapiens	MA0517.2
BP001066.1	STAT1	ENCSR000FAV	K562	Homo sapiens	MA0137.4