Detailed information of deep learning profile BP001035.1

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This page shows detailed deep learning-derived predictions and motifs for ATF4 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF4
Model ID: BP001035.1
Cell line/tissue: HepG2
Class: Basic leucine zipper factors (bZIP)
Family: ATF-4-related factors
JASPAR ID: MA0833.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18848  
Source: ENCSR965SHB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.01 -0.00 -0.00 0.04 -0.00 -0.00 0.00 0.08 0.08 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.03 0.00 -0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 -0.00 0.04 0.00 -0.00 0.08 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 0.06 0.01 0.00 0.03 0.00 0.00 0.00 0.00 0.02 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 3001 2978 2875 2748 3077 3490 2921 3168 3079 3715 3074 3045 2862 2957 3109 2921 3777 3141 2987 3936 3438 3047 5369 59 119 7894 748 23 2344 11678 11710 485 3862 3078 2272 3065 2955 2655 3000 3059 4275 3154 2967 2972 2853 3632 3548 2916 3113 2991 ]
C [ 2911 2510 2442 2634 2857 2496 3068 3047 3307 2539 2508 2402 3314 2874 2237 2409 2369 2723 2742 1987 2411 1885 2763 111 120 217 1623 22 7309 48 8 3324 4054 2643 3427 2524 2376 3371 2550 3442 2195 2907 2704 2514 2891 2331 2562 3341 3166 2630 ]
G [ 2766 2536 3113 2734 2492 2692 2686 2614 2490 2616 3247 3144 2429 2380 3002 3520 2734 3255 2633 3226 3477 4076 3264 25 8088 2444 646 11636 9 3 7 1535 1676 2523 2256 2907 3337 3131 2526 2394 2411 2474 2503 3125 2359 2564 2755 2485 2467 2347 ]
T [ 3055 3709 3303 3617 3307 3055 3058 2904 2857 2863 2904 3142 3128 3522 3385 2883 2853 2614 3371 2584 2407 2725 337 11538 3406 1178 8716 52 2071 4 8 6389 2141 3489 3778 3237 3065 2576 3657 2838 2852 3198 3559 3122 3630 3206 2868 2991 2987 3765 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 0.02 -0.03 -0.03 0.04 -0.04 -0.02 0.01 0.08 0.08 -0.03 0.01 0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.01 0.01 -0.02 -0.03 0.05 -0.03 0.05 0.01 -0.03 0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.02 -0.04 0.05 0.01 -0.02 0.08 -0.06 -0.04 -0.02 0.00 0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 0.00 -0.03 0.06 0.02 -0.00 0.03 -0.01 0.02 -0.05 -0.03 0.03 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2637

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1865

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 991

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 781

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 423

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 378

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 184

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 69

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 53

CWM

PFM

     

HCWM

4 profiles found for the same TF (ATF4) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001031.1 ATF4 ENCSR044UJJ K562 Homo sapiens MA0833.3
BP001032.1 ATF4 ENCSR145TSJ K562 Homo sapiens MA0833.3
BP001033.1 ATF4 ENCSR288ZFV HepG2 Homo sapiens MA0833.3
BP001034.1 ATF4 ENCSR803PAI HepG2 Homo sapiens MA0833.3
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