Detailed information of deep learning profile BP001033.1

This page shows detailed deep learning-derived predictions and motifs for ATF4 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF4
Model ID: BP001033.1
Cell line/tissue: HepG2
Class: Basic leucine zipper factors (bZIP)
Family: ATF-4-related factors
JASPAR ID: MA0833.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18848  
Source: ENCSR288ZFV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.01 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.01 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.01 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 ]

Frequency matrix

A [ 175 171 160 141 152 163 189 154 167 144 129 148 138 136 148 186 185 169 86 359 7 2 2 2 534 23 21 587 12 70 82 176 140 143 156 149 148 166 141 161 151 152 157 141 143 140 164 161 162 156 ]
C [ 128 135 136 151 161 127 135 156 132 142 152 147 153 147 161 143 114 132 74 54 0 2 0 595 2 7 567 0 64 295 250 129 150 154 165 151 137 127 134 140 151 139 147 148 144 134 138 136 175 145 ]
G [ 139 134 141 153 130 112 135 117 142 150 118 137 143 160 149 128 177 140 218 176 1 2 594 0 58 0 5 1 207 88 54 94 124 133 123 134 134 134 159 149 142 128 136 156 145 152 135 150 124 136 ]
T [ 156 158 161 153 155 196 139 171 157 162 199 166 164 155 140 141 122 157 220 9 590 592 2 1 4 568 5 10 315 145 212 199 184 168 154 164 179 171 164 148 154 179 158 153 166 172 161 151 137 161 ]

Hypothetical CWM

A [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.01 -0.00 -0.00 0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 0.00 -0.00 -0.00 -0.01 -0.00 -0.01 0.01 -0.01 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.00 -0.01 -0.01 0.01 -0.01 0.00 -0.01 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.01 0.01 0.01 -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 109

4 profiles found for the same TF (ATF4) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001031.1 ATF4 ENCSR044UJJ K562 Homo sapiens MA0833.3
BP001032.1 ATF4 ENCSR145TSJ K562 Homo sapiens MA0833.3
BP001034.1 ATF4 ENCSR803PAI HepG2 Homo sapiens MA0833.3
BP001035.1 ATF4 ENCSR965SHB HepG2 Homo sapiens MA0833.3
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