JASPAR - ATF4 - BP001034.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for ATF4 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ATF4
Model ID:	BP001034.1
Cell line/tissue:	HepG2
Class:	Basic leucine zipper factors (bZIP)
Family:	ATF-4-related factors
JASPAR ID:	MA0833.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P18848
Source:	ENCSR803PAI
Model:	BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 3577

Contribution weight matrix (CWM)

A [	0.00	0.00	-0.00	0.01	-0.00	-0.00	0.03	-0.00	-0.00	0.00	0.06	0.06	-0.00	0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	0.00	0.00	-0.00	0.00	0.00	-0.00	0.03	0.00	0.00	0.01	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.00	0.00	0.04	0.00	-0.00	0.07	-0.00	0.00	-0.00	-0.00	0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	0.06	0.00	0.00	0.03	-0.00	0.00	-0.00	-0.00	0.01	-0.00	-0.00	0.00	]

Frequency matrix

A [	888	822	862	796	894	981	861	869	912	995	897	845	838	863	868	847	1013	897	880	1127	1058	835	1446	33	29	2669	166	11	638	3454	3518	154	1117	846	661	890	841	755	844	879	1173	875	833	851	804	1012	999	810	880	867	]
C [	898	875	807	887	896	868	976	1004	976	900	862	867	1039	945	814	850	781	910	880	693	652	640	1137	40	49	86	569	7	2405	109	20	1072	1242	910	1089	819	850	1065	865	1057	747	947	894	848	922	816	853	1041	1000	921	]
G [	914	867	978	913	858	894	876	878	866	873	973	966	853	823	949	1108	969	1004	945	975	1229	1422	895	4	2838	535	220	3525	2	8	22	610	603	853	826	917	1037	1013	897	820	852	842	895	982	836	833	878	907	892	830	]
T [	877	1013	930	981	929	834	864	826	823	809	845	899	847	946	946	772	814	766	872	782	638	680	99	3500	661	287	2622	34	532	6	17	1741	615	968	1001	951	849	744	971	821	805	913	955	896	1015	916	847	819	805	959	]

Hypothetical CWM

A [	0.00	0.00	0.00	-0.00	0.02	-0.03	-0.03	0.03	-0.04	-0.02	0.01	0.06	0.06	-0.03	0.01	-0.00	-0.01	-0.00	]
C [	0.01	0.01	0.00	0.01	0.01	0.01	-0.02	-0.03	0.04	-0.03	0.05	0.00	-0.04	0.02	0.01	0.01	0.01	0.01	]
G [	0.01	0.01	0.01	0.01	0.02	-0.05	0.05	0.00	-0.02	0.07	-0.06	-0.02	-0.02	0.00	0.01	0.01	0.01	0.01	]
T [	-0.00	-0.00	-0.00	-0.00	-0.03	0.06	0.01	-0.00	0.03	-0.01	0.01	-0.05	-0.02	0.02	-0.01	0.00	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 156

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 132

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 120

CWM

PFM

HCWM

4 profiles found for the same TF (ATF4) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001031.1	ATF4	ENCSR044UJJ	K562	Homo sapiens	MA0833.3
BP001032.1	ATF4	ENCSR145TSJ	K562	Homo sapiens	MA0833.3
BP001033.1	ATF4	ENCSR288ZFV	HepG2	Homo sapiens	MA0833.3
BP001035.1	ATF4	ENCSR965SHB	HepG2	Homo sapiens	MA0833.3