Detailed information of deep learning profile BP001035.1

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This page shows detailed deep learning-derived predictions and motifs for ATF4 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF4
Model ID: BP001035.1
Cell line/tissue: HepG2
Class: Basic leucine zipper factors (bZIP)
Family: ATF-4-related factors
JASPAR ID: MA0833.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18848  
Source: ENCSR965SHB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.02 0.00 0.00 0.00 0.00 0.03 0.00 0.01 0.06 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.08 -0.00 0.00 0.04 -0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.00 0.00 0.03 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 0.08 0.08 0.00 -0.00 -0.00 0.04 -0.00 -0.00 0.01 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 3765 2987 2991 2868 3206 3630 3122 3559 3198 2852 2838 3657 2576 3065 3237 3778 3489 2141 6389 8 4 2071 52 8716 1178 3406 11538 337 2725 2407 2584 3371 2614 2853 2883 3385 3522 3128 3142 2904 2863 2857 2904 3058 3055 3307 3617 3303 3709 3055 ]
C [ 2347 2467 2485 2755 2564 2359 3125 2503 2474 2411 2394 2526 3131 3337 2907 2256 2523 1676 1535 7 3 9 11636 646 2444 8088 25 3264 4076 3477 3226 2633 3255 2734 3520 3002 2380 2429 3144 3247 2616 2490 2614 2686 2692 2492 2734 3113 2536 2766 ]
G [ 2630 3166 3341 2562 2331 2891 2514 2704 2907 2195 3442 2550 3371 2376 2524 3427 2643 4054 3324 8 48 7309 22 1623 217 120 111 2763 1885 2411 1987 2742 2723 2369 2409 2237 2874 3314 2402 2508 2539 3307 3047 3068 2496 2857 2634 2442 2510 2911 ]
T [ 2991 3113 2916 3548 3632 2853 2972 2967 3154 4275 3059 3000 2655 2955 3065 2272 3078 3862 485 11710 11678 2344 23 748 7894 119 59 5369 3047 3438 3936 2987 3141 3777 2921 3109 2957 2862 3045 3074 3715 3079 3168 2921 3490 3077 2748 2875 2978 3001 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 0.03 -0.03 -0.05 0.02 -0.01 0.03 -0.00 0.02 0.06 -0.03 0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.00 0.00 -0.02 -0.04 -0.06 0.08 -0.02 0.01 0.05 -0.04 0.02 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.03 -0.03 0.01 0.05 -0.03 0.05 -0.03 -0.02 0.01 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.00 0.01 -0.03 0.08 0.08 0.01 -0.02 -0.04 0.04 -0.03 -0.03 0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2637

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1865

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 991

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 781

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 423

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 378

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 184

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 69

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 53

CWM

PFM

     

HCWM

4 profiles found for the same TF (ATF4) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001031.1 ATF4 ENCSR044UJJ K562 Homo sapiens MA0833.3
BP001032.1 ATF4 ENCSR145TSJ K562 Homo sapiens MA0833.3
BP001033.1 ATF4 ENCSR288ZFV HepG2 Homo sapiens MA0833.3
BP001034.1 ATF4 ENCSR803PAI HepG2 Homo sapiens MA0833.3
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