Detailed information of deep learning profile BP001032.1

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This page shows detailed deep learning-derived predictions and motifs for ATF4 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF4
Model ID: BP001032.1
Cell line/tissue: K562
Class: Basic leucine zipper factors (bZIP)
Family: ATF-4-related factors
JASPAR ID: MA0833.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18848  
Source: ENCSR145TSJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 0.04 0.00 -0.00 0.00 0.00 0.07 0.00 0.00 0.11 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.15 -0.00 0.00 0.12 -0.00 0.00 0.01 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 -0.00 0.00 0.06 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 ]
T [ -0.00 -0.00 0.00 0.01 -0.00 0.12 0.12 0.00 -0.00 -0.00 0.09 -0.00 -0.00 0.03 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 5405 4971 5603 5384 8199 5390 5424 5066 5019 5397 6330 6678 5169 5830 4799 8374 5182 6951 5677 7281 6582 3417 13117 13 10 3613 50 18691 417 743 20945 168 4044 4155 4947 6546 4804 4815 5192 6826 7057 5303 5826 5016 4866 5133 5163 5457 5098 6103 ]
C [ 3866 4792 4239 3692 3511 3688 3944 4095 3827 3608 5240 3647 3541 3416 3415 3907 4567 5350 5169 3076 3515 2411 1996 34 36 18 21088 416 1167 20182 24 4041 6552 5385 5157 3740 5761 4991 7038 5319 3593 3820 6645 5323 4259 3886 3766 5228 4663 4313 ]
G [ 4979 3721 5586 5196 3943 5490 5262 3482 3524 5263 3702 5052 5070 3431 6907 3533 6420 3169 3789 5835 4741 7438 5713 12 136 12706 25 1904 161 166 143 3765 3338 3423 2419 4989 4634 3056 3305 3307 5015 6617 3298 3777 4862 6578 5212 5089 3851 4419 ]
T [ 6938 7704 5760 6916 5535 6620 6558 8545 8818 6920 5916 5811 7408 8511 6067 5374 5019 5718 6553 4996 6350 7922 362 21129 21006 4851 25 177 19443 97 76 13214 7254 8225 8665 5913 5989 8326 5653 5736 5523 5448 5419 7072 7201 5591 7047 5414 7576 6353 ]

Hypothetical CWM

   
A [ 0.01 0.01 0.01 -0.01 0.06 -0.05 -0.09 0.04 -0.01 0.08 -0.02 0.01 0.11 -0.06 0.00 -0.00 0.00 0.00 ]
C [ 0.01 0.00 0.01 -0.00 -0.00 -0.03 -0.03 -0.13 0.15 -0.04 -0.02 0.12 -0.08 0.03 0.03 0.03 0.01 0.01 ]
G [ 0.01 0.02 0.02 0.02 0.05 -0.07 0.00 0.10 -0.07 0.08 -0.05 -0.05 0.02 0.02 -0.00 -0.01 0.00 0.01 ]
T [ -0.00 -0.00 0.00 0.03 -0.06 0.12 0.12 0.02 -0.02 -0.07 0.09 -0.04 -0.07 0.05 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1437

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 980

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 763

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 360

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 219

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 201

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 192

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 177

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 167

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 137

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 43

CWM

PFM

     

HCWM

4 profiles found for the same TF (ATF4) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001031.1 ATF4 ENCSR044UJJ K562 Homo sapiens MA0833.3
BP001033.1 ATF4 ENCSR288ZFV HepG2 Homo sapiens MA0833.3
BP001034.1 ATF4 ENCSR803PAI HepG2 Homo sapiens MA0833.3
BP001035.1 ATF4 ENCSR965SHB HepG2 Homo sapiens MA0833.3
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