JASPAR - ATF4 - BP001034.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for ATF4 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ATF4
Model ID:	BP001034.1
Cell line/tissue:	HepG2
Class:	Basic leucine zipper factors (bZIP)
Family:	ATF-4-related factors
JASPAR ID:	MA0833.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P18848
Source:	ENCSR803PAI
Model:	BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 3577

Contribution weight matrix (CWM)

A [	0.00	-0.00	-0.00	0.01	-0.00	-0.00	0.00	-0.00	0.03	0.00	0.00	0.06	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	-0.00	-0.00	0.00	-0.00	0.07	-0.00	0.00	0.04	0.00	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.01	0.00	0.00	0.03	-0.00	0.00	0.00	-0.00	0.00	0.00	0.00	0.00	0.00	]
T [	-0.00	-0.00	0.00	-0.00	0.06	0.06	0.00	-0.00	-0.00	0.03	-0.00	-0.00	0.01	-0.00	0.00	0.00	]

Frequency matrix

A [	959	805	819	847	916	1015	896	955	913	805	821	971	744	849	951	1001	968	615	1741	17	6	532	34	2622	287	661	3500	99	680	638	782	872	766	814	772	946	946	847	899	845	809	823	826	864	834	929	981	930	1013	877	]
C [	830	892	907	878	833	836	982	895	842	852	820	897	1013	1037	917	826	853	603	610	22	8	2	3525	220	535	2838	4	895	1422	1229	975	945	1004	969	1108	949	823	853	966	973	873	866	878	876	894	858	913	978	867	914	]
G [	921	1000	1041	853	816	922	848	894	947	747	1057	865	1065	850	819	1089	910	1242	1072	20	109	2405	7	569	86	49	40	1137	640	652	693	880	910	781	850	814	945	1039	867	862	900	976	1004	976	868	896	887	807	875	898	]
T [	867	880	810	999	1012	804	851	833	875	1173	879	844	755	841	890	661	846	1117	154	3518	3454	638	11	166	2669	29	33	1446	835	1058	1127	880	897	1013	847	868	863	838	845	897	995	912	869	861	981	894	796	862	822	888	]

Hypothetical CWM

A [	0.00	0.00	0.00	-0.01	0.02	-0.02	-0.05	0.01	-0.01	0.03	-0.00	0.01	0.06	-0.03	-0.00	-0.00	-0.00	-0.00	]
C [	0.01	0.01	0.01	0.01	0.00	-0.02	-0.02	-0.06	0.07	-0.02	0.00	0.05	-0.05	0.02	0.01	0.01	0.01	0.01	]
G [	0.01	0.01	0.01	0.01	0.02	-0.04	0.00	0.05	-0.03	0.04	-0.03	-0.02	0.01	0.01	0.01	0.00	0.01	0.01	]
T [	-0.00	-0.01	-0.00	0.01	-0.03	0.06	0.06	0.01	-0.02	-0.04	0.03	-0.03	-0.03	0.02	-0.00	0.00	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 156

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 132

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 120

CWM

PFM

HCWM

4 profiles found for the same TF (ATF4) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001031.1	ATF4	ENCSR044UJJ	K562	Homo sapiens	MA0833.3
BP001032.1	ATF4	ENCSR145TSJ	K562	Homo sapiens	MA0833.3
BP001033.1	ATF4	ENCSR288ZFV	HepG2	Homo sapiens	MA0833.3
BP001035.1	ATF4	ENCSR965SHB	HepG2	Homo sapiens	MA0833.3