Detailed information of deep learning profile BP001032.1

  1. Home
  2. Deep Learning Profile > BP001032.1
This page shows detailed deep learning-derived predictions and motifs for ATF4 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ATF4
Model ID: BP001032.1
Cell line/tissue: K562
Class: Basic leucine zipper factors (bZIP)
Family: ATF-4-related factors
JASPAR ID: MA0833.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18848  
Source: ENCSR145TSJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.03 -0.00 -0.00 0.09 -0.00 -0.00 0.00 0.12 0.12 -0.00 0.01 0.00 -0.00 -0.00 ]
C [ -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.06 0.00 -0.00 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.01 0.00 -0.00 0.12 0.00 -0.00 0.15 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.11 0.00 0.00 0.07 0.00 0.00 -0.00 0.00 0.04 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 6353 7576 5414 7047 5591 7201 7072 5419 5448 5523 5736 5653 8326 5989 5913 8665 8225 7254 13214 76 97 19443 177 25 4851 21006 21129 362 7922 6350 4996 6553 5718 5019 5374 6067 8511 7408 5811 5916 6920 8818 8545 6558 6620 5535 6916 5760 7704 6938 ]
C [ 4419 3851 5089 5212 6578 4862 3777 3298 6617 5015 3307 3305 3056 4634 4989 2419 3423 3338 3765 143 166 161 1904 25 12706 136 12 5713 7438 4741 5835 3789 3169 6420 3533 6907 3431 5070 5052 3702 5263 3524 3482 5262 5490 3943 5196 5586 3721 4979 ]
G [ 4313 4663 5228 3766 3886 4259 5323 6645 3820 3593 5319 7038 4991 5761 3740 5157 5385 6552 4041 24 20182 1167 416 21088 18 36 34 1996 2411 3515 3076 5169 5350 4567 3907 3415 3416 3541 3647 5240 3608 3827 4095 3944 3688 3511 3692 4239 4792 3866 ]
T [ 6103 5098 5457 5163 5133 4866 5016 5826 5303 7057 6826 5192 4815 4804 6546 4947 4155 4044 168 20945 743 417 18691 50 3613 10 13 13117 3417 6582 7281 5677 6951 5182 8374 4799 5830 5169 6678 6330 5397 5019 5066 5424 5390 8199 5384 5603 4971 5405 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 0.05 -0.07 -0.04 0.09 -0.07 -0.02 0.02 0.12 0.12 -0.06 0.03 0.00 -0.00 -0.00 ]
C [ 0.01 0.00 -0.01 -0.00 0.02 0.02 -0.05 -0.05 0.08 -0.07 0.10 0.00 -0.07 0.05 0.02 0.02 0.02 0.01 ]
G [ 0.01 0.01 0.03 0.03 0.03 -0.08 0.12 -0.02 -0.04 0.15 -0.13 -0.03 -0.03 -0.00 -0.00 0.01 0.00 0.01 ]
T [ 0.00 0.00 -0.00 0.00 -0.06 0.11 0.01 -0.02 0.08 -0.01 0.04 -0.09 -0.05 0.06 -0.01 0.01 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1437

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 980

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 763

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 360

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 219

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 201

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 192

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 177

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 167

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 137

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 43

CWM

PFM

     

HCWM

4 profiles found for the same TF (ATF4) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001031.1 ATF4 ENCSR044UJJ K562 Homo sapiens MA0833.3
BP001033.1 ATF4 ENCSR288ZFV HepG2 Homo sapiens MA0833.3
BP001034.1 ATF4 ENCSR803PAI HepG2 Homo sapiens MA0833.3
BP001035.1 ATF4 ENCSR965SHB HepG2 Homo sapiens MA0833.3
Showing 4 profiles of page 1 from 1 pages
  • 1 (current)