JASPAR - RFX1 - BP001009.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for RFX1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	RFX1
Model ID:	BP001009.1
Cell line/tissue:	K562
Class:	Fork head/winged helix factors
Family:	RFX-related factors
JASPAR ID:	MA0509.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P48743
Source:	ENCSR968GIB
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 15773

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	0.00	0.00	-0.00	-0.00	0.08	-0.00	0.00	0.00	-0.00	0.03	0.07	-0.00	0.00	0.00	-0.00	-0.00	]
C [	0.00	0.00	0.01	0.00	0.00	-0.00	0.00	-0.00	0.11	0.09	-0.00	-0.00	-0.00	-0.00	0.02	-0.00	0.00	0.07	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	-0.00	0.00	0.12	0.00	-0.00	0.06	-0.00	-0.00	-0.00	-0.00	0.11	0.10	-0.00	0.01	-0.00	-0.00	0.00	0.01	0.00	0.00	]
T [	0.00	-0.00	0.00	0.00	0.00	0.12	0.06	-0.00	0.00	0.01	0.00	0.05	-0.00	-0.00	0.01	0.00	-0.00	0.00	-0.00	-0.00	0.00	-0.00	]

Frequency matrix

A [	3966	4367	3608	4291	3581	3679	3719	3743	4631	4627	3549	3730	3411	3364	3527	3283	3157	2646	2535	499	63	1267	2503	26	27	13488	1944	1407	1729	3991	8143	11452	835	4508	4197	3523	4968	5066	4911	3756	3778	3877	3935	3620	4895	3681	3641	3934	3655	4177	]
C [	3463	3599	3604	3543	3714	3744	3410	3412	3401	3367	4547	3552	3759	4431	4480	3602	3892	5404	2590	19	159	1208	350	13705	11674	605	625	73	413	5694	894	1102	9606	3975	2710	3529	3508	3278	3432	4628	3578	3387	3765	4538	3553	3731	3659	3573	4277	3553	]
G [	3963	4193	3899	4022	4430	4535	4863	3837	3970	3725	3696	3760	3743	3978	3417	4205	5116	2877	4659	15226	55	78	11206	59	56	643	1902	14205	13424	2003	4514	1465	1004	3586	6262	4126	3999	3928	3963	3622	3679	4858	3669	3674	3550	3654	4784	4715	3916	4522	]
T [	4381	3614	4662	3917	4048	3815	3781	4781	3771	4054	3981	4731	4860	4000	4349	4683	3608	4846	5989	29	15496	13220	1714	1983	4016	1037	11302	88	207	4085	2222	1754	4328	3704	2604	4595	3298	3501	3467	3767	4738	3651	4404	3941	3775	4707	3689	3551	3925	3521	]

Hypothetical CWM

A [	-0.00	0.00	-0.02	-0.01	0.02	-0.04	0.01	0.04	-0.07	-0.08	0.09	0.02	0.06	0.05	0.00	0.06	0.09	-0.03	0.01	0.02	0.00	0.00	]
C [	0.01	0.01	0.03	0.03	-0.05	-0.01	0.06	-0.03	0.13	0.12	-0.03	0.01	-0.03	-0.02	0.07	-0.05	0.00	0.10	0.02	0.01	0.01	0.02	]
G [	0.02	0.02	0.01	0.02	0.13	-0.02	-0.08	0.08	-0.03	-0.04	0.01	-0.01	0.12	0.11	-0.01	0.05	-0.01	-0.04	0.02	0.03	0.01	0.01	]
T [	0.00	0.01	0.02	0.01	-0.05	0.12	0.07	-0.00	0.06	0.07	0.02	0.07	-0.07	-0.06	0.03	0.01	-0.03	0.02	-0.00	-0.01	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2388

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 914

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 271

CWM

PFM

HCWM

4 profiles found for the same TF (RFX1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001005.1	RFX1	ENCSR041AXL	K562	Homo sapiens	MA0509.3
BP001006.1	RFX1	ENCSR066TET	MCF-7	Homo sapiens	MA0509.3
BP001007.1	RFX1	ENCSR788XNX	MCF-7	Homo sapiens	MA0509.3
BP001008.1	RFX1	ENCSR928API	HepG2	Homo sapiens	MA0509.3