JASPAR - RFX1 - BP001007.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for RFX1 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	RFX1
Model ID:	BP001007.1
Cell line/tissue:	MCF-7
Class:	Fork head/winged helix factors
Family:	RFX-related factors
JASPAR ID:	MA0509.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P48743
Source:	ENCSR788XNX
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 11945

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	0.00	0.01	-0.00	-0.00	0.06	0.00	0.02	0.01	-0.00	0.07	0.13	0.00	0.00	0.00	0.00	0.00	]
C [	0.00	0.00	0.01	0.01	-0.00	-0.00	0.01	-0.00	0.11	0.12	-0.00	-0.00	-0.00	-0.00	0.06	-0.00	-0.00	0.14	0.00	-0.00	0.00	0.00	]
G [	0.00	0.00	-0.00	0.00	0.08	-0.00	-0.00	0.02	-0.00	-0.00	-0.00	-0.00	0.09	0.11	-0.00	0.00	-0.00	0.00	0.00	0.01	0.00	0.00	]
T [	0.00	0.00	0.00	0.00	-0.00	0.09	0.03	-0.01	0.00	0.00	0.00	0.08	-0.00	-0.00	0.00	0.00	-0.00	0.00	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	2673	2762	2774	2866	3182	2885	3004	2920	2850	3267	2919	2668	2722	2553	3086	1965	2341	2796	747	1875	3465	132	66	8869	722	3143	1615	1187	10274	11730	14	4530	3753	2780	3390	3289	3036	3404	3188	3033	3142	2976	3334	2902	3046	3156	3086	3201	2849	3002	]
C [	3273	3129	3408	3389	2960	2854	2985	2923	3339	2877	2951	3197	3175	3227	3396	4623	3064	789	958	3679	1369	10270	10978	1275	505	28	71	8653	48	53	11722	3750	2294	3635	3239	2847	3207	3074	3018	3072	3036	3085	3084	3511	3227	3125	3283	3264	3367	3305	]
G [	2834	3211	2779	2962	2950	2900	3201	3004	2729	2976	3324	2795	2486	2722	2824	2199	3212	7777	832	640	4027	275	59	507	468	8765	10237	302	824	142	1	1864	4410	3189	2920	3163	3167	2909	2862	3209	2697	2829	2711	2729	2952	3032	2709	2751	2837	2761	]
T [	3165	2843	2984	2728	2853	3306	2755	3098	3027	2825	2751	3285	3562	3443	2639	3158	3328	583	9408	5751	3084	1268	842	1294	10250	9	22	1803	799	20	208	1801	1488	2341	2396	2646	2535	2558	2877	2631	3070	3055	2816	2803	2720	2632	2867	2729	2892	2877	]

Hypothetical CWM

A [	-0.00	-0.00	-0.01	-0.01	0.02	-0.03	0.02	0.03	-0.06	-0.08	0.08	0.03	0.09	0.07	0.00	0.08	0.13	-0.04	0.01	0.02	0.01	0.01	]
C [	0.01	0.02	0.03	0.04	-0.03	-0.00	0.05	-0.01	0.12	0.13	-0.00	0.01	-0.05	-0.02	0.09	-0.08	-0.01	0.14	0.03	0.01	0.01	0.02	]
G [	0.02	0.01	0.01	0.03	0.12	0.01	-0.05	0.08	-0.00	-0.04	0.01	-0.02	0.13	0.13	-0.02	0.06	-0.00	-0.05	0.04	0.04	0.02	0.01	]
T [	0.01	0.01	0.01	0.01	-0.04	0.10	0.07	0.00	0.05	0.07	0.03	0.10	-0.09	-0.08	0.04	0.02	-0.05	0.02	-0.01	-0.02	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1771

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 593

CWM

PFM

HCWM

4 profiles found for the same TF (RFX1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001005.1	RFX1	ENCSR041AXL	K562	Homo sapiens	MA0509.3
BP001006.1	RFX1	ENCSR066TET	MCF-7	Homo sapiens	MA0509.3
BP001008.1	RFX1	ENCSR928API	HepG2	Homo sapiens	MA0509.3
BP001009.1	RFX1	ENCSR968GIB	K562	Homo sapiens	MA0509.3