Detailed information of deep learning profile BP001009.1

This page shows detailed deep learning-derived predictions and motifs for RFX1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX1
Model ID: BP001009.1
Cell line/tissue: K562
Class: Fork head/winged helix factors
Family: RFX-related factors
JASPAR ID: MA0509.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48743  
Source: ENCSR968GIB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.05 0.00 0.01 0.00 -0.00 0.06 0.12 0.00 0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.01 0.00 -0.00 -0.00 0.01 -0.00 0.10 0.11 -0.00 -0.00 -0.00 -0.00 0.06 -0.00 0.00 0.12 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.07 0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.09 0.11 -0.00 0.00 -0.00 0.00 0.00 0.01 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 -0.00 0.07 0.03 -0.00 0.00 0.00 -0.00 0.08 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

A [ 3521 3925 3551 3689 4707 3775 3941 4404 3651 4738 3767 3467 3501 3298 4595 2604 3704 4328 1754 2222 4085 207 88 11302 1037 4016 1983 1714 13220 15496 29 5989 4846 3608 4683 4349 4000 4860 4731 3981 4054 3771 4781 3781 3815 4048 3917 4662 3614 4381 ]
C [ 4522 3916 4715 4784 3654 3550 3674 3669 4858 3679 3622 3963 3928 3999 4126 6262 3586 1004 1465 4514 2003 13424 14205 1902 643 56 59 11206 78 55 15226 4659 2877 5116 4205 3417 3978 3743 3760 3696 3725 3970 3837 4863 4535 4430 4022 3899 4193 3963 ]
G [ 3553 4277 3573 3659 3731 3553 4538 3765 3387 3578 4628 3432 3278 3508 3529 2710 3975 9606 1102 894 5694 413 73 625 605 11674 13705 350 1208 159 19 2590 5404 3892 3602 4480 4431 3759 3552 4547 3367 3401 3412 3410 3744 3714 3543 3604 3599 3463 ]
T [ 4177 3655 3934 3641 3681 4895 3620 3935 3877 3778 3756 4911 5066 4968 3523 4197 4508 835 11452 8143 3991 1729 1407 1944 13488 27 26 2503 1267 63 499 2535 2646 3157 3283 3527 3364 3411 3730 3549 4627 4631 3743 3719 3679 3581 4291 3608 4367 3966 ]

Hypothetical CWM

A [ 0.00 0.00 -0.01 -0.00 0.02 -0.03 0.01 0.03 -0.06 -0.07 0.07 0.02 0.07 0.06 -0.00 0.07 0.12 -0.05 0.01 0.02 0.01 0.00 ]
C [ 0.01 0.01 0.03 0.02 -0.04 -0.01 0.05 -0.01 0.11 0.12 -0.01 0.01 -0.04 -0.03 0.08 -0.08 -0.02 0.13 0.02 0.01 0.02 0.02 ]
G [ 0.02 0.01 0.01 0.02 0.10 0.00 -0.05 0.07 -0.02 -0.03 0.01 -0.03 0.12 0.13 -0.03 0.06 -0.01 -0.05 0.03 0.03 0.01 0.01 ]
T [ 0.00 0.00 0.02 0.01 -0.03 0.09 0.06 0.00 0.05 0.06 0.02 0.09 -0.08 -0.07 0.04 0.01 -0.04 0.02 -0.01 -0.02 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2388

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 914

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 271

4 profiles found for the same TF (RFX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001005.1 RFX1 ENCSR041AXL K562 Homo sapiens MA0509.3
BP001006.1 RFX1 ENCSR066TET MCF-7 Homo sapiens MA0509.3
BP001007.1 RFX1 ENCSR788XNX MCF-7 Homo sapiens MA0509.3
BP001008.1 RFX1 ENCSR928API HepG2 Homo sapiens MA0509.3
Showing 4 profiles of page 1 from 1 pages
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