Detailed information of deep learning profile BP001006.1

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This page shows detailed deep learning-derived predictions and motifs for RFX1 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX1
Model ID: BP001006.1
Cell line/tissue: MCF-7
Class: Fork head/winged helix factors
Family: RFX-related factors
JASPAR ID: MA0509.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48743  
Source: ENCSR066TET
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.03 0.00 0.01 0.00 -0.00 0.05 0.09 -0.00 0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.01 0.00 -0.00 -0.00 0.01 0.00 0.07 0.08 0.00 -0.00 -0.00 -0.00 0.04 -0.00 -0.00 0.10 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.04 0.00 -0.00 0.01 0.00 -0.00 -0.00 -0.00 0.06 0.09 -0.00 0.00 -0.00 -0.00 0.00 0.01 0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.00 -0.00 0.05 0.02 -0.00 0.00 0.00 0.00 0.05 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3459 3743 3414 3445 4153 3644 3685 3769 3585 4162 3740 3391 3535 3226 4179 2739 3398 3913 1831 2439 3723 497 258 9142 1517 4596 245 1943 12376 15040 34 5966 4503 3422 4311 4018 3883 4500 4205 4071 3983 3693 4278 3681 3815 3953 3820 4131 3634 4012 ]
C [ 4275 3951 4603 4616 3746 3684 3887 3879 4476 3843 3846 4099 4038 4306 4347 5830 3984 1724 2168 4704 3069 13078 13611 2761 1022 78 43 10546 139 91 14969 4553 3000 4887 4230 3791 4054 3934 3864 3920 3977 4108 4092 4584 4356 4191 4277 4198 4333 4159 ]
G [ 3785 4145 3700 3720 3899 3887 4403 3890 3573 3689 4246 3594 3442 3602 3581 3047 4007 8345 1965 1525 4524 753 133 891 1172 10761 15155 699 1803 270 10 2475 5750 4214 3850 4287 4293 3748 3789 4244 3513 3605 3558 3616 3904 3866 3657 3695 3726 3571 ]
T [ 3952 3632 3754 3690 3673 4256 3496 3933 3837 3777 3639 4387 4456 4337 3364 3855 4082 1489 9507 6803 4155 1143 1469 2677 11760 36 28 2283 1153 70 458 2477 2218 2948 3080 3375 3241 3289 3613 3236 3998 4065 3543 3590 3396 3461 3717 3447 3778 3729 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.01 -0.01 0.01 -0.03 0.00 0.01 -0.05 -0.06 0.04 0.02 0.06 0.04 -0.00 0.06 0.09 -0.03 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.01 0.02 0.02 -0.03 -0.00 0.03 -0.00 0.08 0.09 0.00 0.00 -0.03 -0.02 0.07 -0.06 -0.02 0.10 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.07 0.00 -0.03 0.06 -0.00 -0.02 0.00 -0.01 0.09 0.09 -0.02 0.04 -0.00 -0.05 0.02 0.02 0.01 0.01 ]
T [ 0.00 0.00 0.01 0.00 -0.02 0.06 0.04 -0.00 0.03 0.04 0.02 0.06 -0.08 -0.06 0.02 0.00 -0.04 0.01 -0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3934

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3211

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1391

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 614

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 511

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 395

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 250

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 153

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 48

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_2

Num. of seqlets: 44

CWM

PFM

     

HCWM

4 profiles found for the same TF (RFX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001005.1 RFX1 ENCSR041AXL K562 Homo sapiens MA0509.3
BP001007.1 RFX1 ENCSR788XNX MCF-7 Homo sapiens MA0509.3
BP001008.1 RFX1 ENCSR928API HepG2 Homo sapiens MA0509.3
BP001009.1 RFX1 ENCSR968GIB K562 Homo sapiens MA0509.3
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