JASPAR - RFX1 - BP001008.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for RFX1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	RFX1
Model ID:	BP001008.1
Cell line/tissue:	HepG2
Class:	Fork head/winged helix factors
Family:	RFX-related factors
JASPAR ID:	MA0509.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P48743
Source:	ENCSR928API
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 6064

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.00	-0.00	-0.00	0.04	-0.00	0.00	0.00	-0.00	0.02	0.05	0.00	0.00	0.00	-0.00	0.00	]
C [	0.00	0.00	0.01	0.01	-0.00	-0.00	0.00	-0.00	0.07	0.05	-0.00	-0.00	-0.00	0.00	0.02	-0.00	0.00	0.05	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	-0.00	0.00	0.09	-0.00	-0.00	0.04	-0.00	0.00	-0.00	-0.00	0.07	0.05	0.00	0.01	-0.00	-0.00	0.00	0.01	0.00	0.00	]
T [	-0.00	0.00	0.00	-0.00	-0.00	0.09	0.04	-0.00	0.00	0.01	0.00	0.02	0.00	-0.00	0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	1374	1362	1296	1332	1281	1259	1317	1321	1398	1382	1287	1340	1192	1224	1206	1110	1147	593	882	65	6	439	936	33	17	4980	819	541	873	1495	2876	4386	614	1683	1446	1307	1577	1592	1524	1372	1358	1377	1430	1373	1497	1358	1332	1484	1342	1439	]
C [	1611	1527	1622	1596	1630	1659	1529	1541	1549	1461	1595	1641	1566	1567	1683	1728	1764	2617	1296	2	98	557	86	5305	4386	362	360	45	216	2129	569	561	3970	1871	1322	1655	1524	1438	1559	1691	1599	1614	1643	1595	1589	1661	1708	1528	1674	1651	]
G [	1705	1789	1685	1690	1716	1659	1815	1652	1697	1704	1689	1661	1746	1711	1558	1627	1755	1097	1837	5987	10	29	4531	34	48	314	940	5340	4862	1055	1739	696	498	1500	2379	1798	1721	1737	1714	1641	1604	1717	1625	1577	1614	1600	1670	1712	1678	1698	]
T [	1374	1386	1461	1446	1437	1487	1403	1550	1420	1517	1493	1422	1560	1562	1617	1599	1398	1757	2049	10	5950	5039	511	692	1613	408	3945	138	113	1385	880	421	982	1010	917	1304	1242	1297	1267	1360	1503	1356	1366	1519	1364	1445	1354	1340	1370	1276	]

Hypothetical CWM

A [	0.00	0.00	-0.01	-0.01	0.00	-0.04	0.01	0.02	-0.06	-0.07	0.05	0.01	0.04	0.02	-0.01	0.04	0.06	-0.01	0.01	0.01	0.00	0.01	]
C [	0.01	0.01	0.03	0.03	-0.05	-0.00	0.04	-0.03	0.08	0.07	-0.01	0.01	-0.03	-0.01	0.04	-0.04	0.00	0.06	0.01	0.01	0.01	0.01	]
G [	0.01	0.01	0.00	0.01	0.10	-0.01	-0.07	0.06	-0.03	-0.03	0.00	-0.01	0.07	0.06	-0.00	0.03	-0.00	-0.03	0.02	0.02	0.01	0.00	]
T [	0.01	0.01	0.02	0.00	-0.03	0.09	0.05	-0.01	0.03	0.05	0.01	0.04	-0.06	-0.04	0.01	0.01	-0.03	0.00	-0.01	-0.01	0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 839

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 151

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 121

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 22

CWM

PFM

HCWM

4 profiles found for the same TF (RFX1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001005.1	RFX1	ENCSR041AXL	K562	Homo sapiens	MA0509.3
BP001006.1	RFX1	ENCSR066TET	MCF-7	Homo sapiens	MA0509.3
BP001007.1	RFX1	ENCSR788XNX	MCF-7	Homo sapiens	MA0509.3
BP001009.1	RFX1	ENCSR968GIB	K562	Homo sapiens	MA0509.3