Detailed information of deep learning profile BP001005.1

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This page shows detailed deep learning-derived predictions and motifs for RFX1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX1
Model ID: BP001005.1
Cell line/tissue: K562
Class: Fork head/winged helix factors
Family: RFX-related factors
JASPAR ID: MA0509.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48743  
Source: ENCSR041AXL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.07 0.00 0.00 0.00 -0.00 0.03 0.06 -0.00 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.00 -0.00 -0.00 0.00 -0.00 0.10 0.08 -0.00 -0.00 -0.00 0.00 0.02 -0.00 0.00 0.06 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.12 0.00 -0.00 0.05 -0.00 -0.00 -0.00 -0.00 0.10 0.09 -0.00 0.01 -0.00 -0.00 0.00 0.01 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 0.11 0.06 -0.00 0.00 0.01 0.00 0.05 -0.00 -0.00 0.01 0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 3771 4266 3592 4204 3621 3630 3646 3644 4542 4484 3433 3559 3368 3310 3440 3076 3157 2473 2499 406 40 1287 2530 42 27 13173 2278 1279 1954 3860 7579 10718 1102 4422 4002 3419 4734 4821 4766 3625 3484 3642 3766 3530 4769 3658 3649 3881 3629 4018 ]
C [ 3570 3583 3718 3627 3807 3916 3542 3599 3592 3490 4503 3791 3879 4362 4538 3901 4098 5714 2612 13 147 1543 356 13829 11357 755 726 99 600 5903 1118 1505 9351 4071 2924 3678 3570 3484 3570 4680 3757 3512 3787 4665 3640 3769 3679 3621 4363 3736 ]
G [ 4105 4340 4150 4276 4524 4553 4928 3978 4013 3941 3993 3909 3918 4269 3554 4268 4922 2895 4765 15333 44 90 10939 64 63 763 2406 14272 12897 2253 4728 1723 1164 3656 6258 4230 4234 4014 3974 3860 3861 4985 3961 3854 3790 3803 4899 4756 3896 4511 ]
T [ 4327 3584 4313 3666 3821 3674 3657 4552 3626 3858 3844 4514 4608 3832 4241 4528 3596 4691 5897 21 15542 12853 1948 1838 4326 1082 10363 123 322 3757 2348 1827 4156 3624 2589 4446 3235 3454 3463 3608 4671 3634 4259 3724 3574 4543 3546 3515 3885 3508 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.02 -0.01 0.02 -0.04 0.01 0.03 -0.07 -0.07 0.08 0.02 0.05 0.04 0.00 0.06 0.08 -0.03 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.01 0.03 0.03 -0.05 -0.00 0.05 -0.04 0.12 0.11 -0.02 0.01 -0.03 -0.01 0.06 -0.06 0.00 0.09 0.02 0.00 0.01 0.02 ]
G [ 0.02 0.01 0.00 0.02 0.12 -0.02 -0.08 0.08 -0.03 -0.04 0.01 -0.01 0.11 0.10 -0.01 0.04 -0.01 -0.04 0.02 0.03 0.01 0.01 ]
T [ 0.00 0.00 0.02 0.00 -0.05 0.11 0.07 0.00 0.05 0.07 0.02 0.06 -0.07 -0.06 0.02 0.01 -0.02 0.02 -0.00 -0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2154

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 863

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 227

CWM

PFM

     

HCWM

4 profiles found for the same TF (RFX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001006.1 RFX1 ENCSR066TET MCF-7 Homo sapiens MA0509.3
BP001007.1 RFX1 ENCSR788XNX MCF-7 Homo sapiens MA0509.3
BP001008.1 RFX1 ENCSR928API HepG2 Homo sapiens MA0509.3
BP001009.1 RFX1 ENCSR968GIB K562 Homo sapiens MA0509.3
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